Protein Info for mRNA_2196 in Rhodosporidium toruloides IFO0880

Name: 10564
Annotation: HMMPfam-Bromodomain associated-PF07524

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF07524: Bromo_TP" amino acids 27 to 90 (64 residues), 24.7 bits, see alignment 9.6e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (911 amino acids)

>mRNA_2196 HMMPfam-Bromodomain associated-PF07524 (Rhodosporidium toruloides IFO0880)
MSAPSTLPDHLAYLSTLVLVSRASASSSAANSTSPSGFTHARTLPLHTLSHLLRSYLHLV
ASAAVESANQGGRTKVSLWDVGEALDEYGFRGRAGLAELREEAERGLDGVEEEAEQLADL
AKGLQDHLALPPIQPPLCQLSYDPLGPSELSLLSLVQSLPSEDAATPGATDGSSSSDEED
EIASPPPTQPPTQESVPQIKPEPSFDAINGLESFGLGDLGSLTGNDANFFDSLPLGSLPP
TSQGAPATNGIGDITASVFHPLDLAGRPIADLSLLGPASLSSLPFPIDEEDTRPFPAWRD
PAQVPSYVPPFFPPFPGMERESPEALARRRRRERERERDALEAATGQQQQQGTGATVSRA
AAALMLGAGAGGDPWQEAIPYSASSLATMANEFGHSLPTPSSPHSGKGGKDLPNGGPGGK
SRKKRRRSLSPPPSTSTSLAAFETIQPLMPHQPSFLRTNQLRRTAAGYIAYNQRHPELAI
SSDSLFGSLPYAQPLRQPTLPPGFLPDFAPPLIHPFNTNLPFTVSNPVPYHPAASTSILP
APPPNPRIPTVLSSIARELSFPLQFDTRPGMRDQLHPNIALFARLRRIGPPGPLGPKGEA
LNYEFIGQTSLVALSNVEWPERRYNAKLPKRFGAEDPDAAAAAGGGGIKLKLGGGTGGGA
ATTGRQTREGSMAISTPWNTFGGSPAPFLGSGTGATPGPNGVALGPSSSTFSAFEFGNTS
NLPFTSTAFPSATPAPTDFPAAQPQPDFDYPDFLLSAGGFSAEPTPAGGTELDWATIAST
AASVAPTVTATSAIDPALESTPAPVASTSASTSVIDPSLAGETATTSSGVPAPPPPPPPP
APEPTPAESSAAPAPAPAGQDSAPLEADGADASMDMDGVEDAVSRAIQASVSQGGMLFSI
PGMGGGQQDGQ