Protein Info for mRNA_2207 in Rhodosporidium toruloides IFO0880

Name: 10575
Annotation: K08284 MID1 calcium channel MID1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 609 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details transmembrane" amino acids 590 to 608 (19 residues), see Phobius details PF12929: Mid1" amino acids 78 to 519 (442 residues), 227.3 bits, see alignment E=2.2e-71

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (609 amino acids)

>mRNA_2207 K08284 MID1 calcium channel MID1 (Rhodosporidium toruloides IFO0880)
MLPRIRRPTNYRRRPPRLAGFPLISLITSLVLLALFLTQAAAQSVTTLTDPSTITFTLDP
AGSATYFLPSSASTNPPIYISLSLCSIPSSLSSNTSFLLPPVLDTLLYVSSTPDIQPYPS
NASTPDDIFNRGESLATSKLEYGYGNVTLEVDEGERGIYVAVFAPDLSKVLEADASVNGQ
WVFELDVSSGTADPPYVARSRAGLRTEDTDMSSVLLSTAKWTGDQPAYQAIVAPTNGLAL
ALSRSKCFVRSMAGQSVASGANLNTSTTTRGWPAGGTRTQYFVDGLDRGANYTAWLLENG
TMSDGGGAIQTRVWDPVFFATKSSDSCRLVYDIDVCPSVAYAVPAPASLDTPSLISFFNS
SISASLTNFTRTMTTFPCGSDEMGRYSVVSTCQDCINAYRDYLCAMTMPRCTDAPSNATL
NDTTLAAGDFLPSYAIPSQYDTSLIRTDPFASRTPLFGPSNLSATFPTLFNSTYRPTRSN
LLAQSPFPYTETPPCLDICYLVEARCPPFLGWSCPKNSDGSPSGGTGSAAYGVTVDVPSA
QRLGGDVKGSDLHKRAADRWGNVYCNALYSDLAMAAQFAPPSSAASLLNSIPRIALTFLV
VAVSFMLCS