Protein Info for mRNA_2209 in Rhodosporidium toruloides IFO0880
Name: 10577
Annotation: K14157 AASS alpha-aminoadipic semialdehyde synthase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR) / Saccharopine dehydrogenase (EC 1.5.1.9)" in subsystem Lysine degradation (EC 1.5.1.8, EC 1.5.1.9)
MetaCyc Pathways
- L-lysine degradation XI (mammalian) (3/5 steps found)
- superpathway of L-lysine degradation (11/43 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.5.1.8 or 1.5.1.9
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1012 amino acids)
>mRNA_2209 K14157 AASS alpha-aminoadipic semialdehyde synthase (Rhodosporidium toruloides IFO0880) MRGDTPRPRYLARLFSTAYTMQSVSLARTRFARQLRTKGRPFSGSAQALAVLGLRAEDPA RKWERRAALDPEAVSELVKDGHDVLVEKCAKRAIGNDEYAKAGARVVDAFDPSACDVVVG VKEPTIPSLSSNTSLSKPAAHLAFFHCHKGQEYNYPLLRTLLQSSKRSGTRFIDYELLTS CSGTPTRSEPTIPGTSITPPTAPPRKRTVGFGFLAGCSGMADGLAQLGTKLLAGKGVVSP FLSLPRPLQAGTVDRMEKELRRVGEAIRRGEMGERLGPIVITISGRGKVGDGARKALDEL GVEWVKADKLPEVASHAPTTIYACHLELSDYLVDRSGKAFDREEYRAHPERFDSVFHEKV APYSTVFLNGGFWAPPSPRLLTTAQLAALQQSPKSRLISIVDVSCDFGGGLEFVKAATTL DDPIVQYDAVSDQLHRDPAHPTSIQLSSVEILPSAFPLDATKHFSKVLLPYLRHLLDDPS LARTTGDSEIREALKRATLVRDGKLEKQHEWLYGVLEKANVAEKRRKAVLLGAGLVAGPA VRTLAARPDVDVIVGASRFKAPEDDANSFARTASNDLPAAEKLASGLANVSTVSLDASSE QALSDLVASADVVLSLLPAPMHVNVANLCIKHKKALVTASYVSPAMAALHDSAKDAGVVL LNELGLDPGIDHITAMRLIHEAKETGNKIKSFVSFCGGLPAPEISNVPLGYKFSWSPRGV LTAALNSASFRLSGRNISIPGSDLLRLNFPQVPLIRGFAFEGVANRDSLAYLPQYGLDKD LPTILRGTLRYPGFSKIADAFKRLGLFDTEALDAPVERWTDLLPVCLRKQGFTVDAGLQS ALEQVLGGDAALAREVFQELQALSLVEGADSSLASDLPPLPSVPAAPIDLLSGILANRLA YKPGERDAVVLAHQVTTESADGQVELFTSSLVQYGDEKASAMATTVGVPIALGALLYLDG KIAQRGVVSPASDEVWRPMLTALQDAGIRFVEGRRKGTRGVLEQLEQQVARF