Protein Info for mRNA_2210 in Rhodosporidium toruloides IFO0880

Name: 10578
Annotation: K20407 MIOS, MIO WD repeat-containing protein mio

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1091 PF17034: zinc_ribbon_16" amino acids 987 to 1088 (102 residues), 40.2 bits, see alignment E=1.9e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1091 amino acids)

>mRNA_2210 K20407 MIOS, MIO WD repeat-containing protein mio (Rhodosporidium toruloides IFO0880)
MQTTRGRSVIAAPDGTDRFLVGGGAELRLYEAQTTRTATGQRSHRFTTSSVVSELAGLRA
FAWAPGKHAASPLVAAGLTTGRVLLLRMDEGDGRGGGKAMPPVQINVRHSRPCNILTFCP
DQPGLLAVGLEKGRGESLLVYDVQRSFDSSANHDPSSSSASRNFSLHRETSASGRSRNQS
PARLSSLSSPSPSPSPHDPLPLVSFGSSEVITSAAFLASPSGPSASDTSPLLAAAMANKW
LRVYDLRSPPSTVTTWSTRSIWGIQSNPFNGEQLTSYGDDGIIRLWDLRKPMDPLLSFSE
VDAGSIPAQKQRANVVPKPLAETAWSSEKRGVFVTLEKEGSALRVWNLVDGPGPRLVHAA
GGVGATSRVGSVSGAMAGGMDVGVDEKDVLRMPIVLDDRKTRSFQQTLTSFAFASSGDSA
ELRFVGLSRDSANPGSSGQRLELIDLPPASHSAFLERSILVSSSPDNHSTYSIPVGSSTL
DDTDPLDSLAAAQRRLSISPATPALQISVDPLIRSPQTTERGRTLSLAGLLPPQTDRNLT
PRPSNMLMRRISSGGVVQLVAPSAADEMGLRSLGTDMSVVVRERVEAGYGSDPLVNAGLS
DAGVKEFWLWVTRAQALSSEACVPDYDFRFRGVLRILLGFPSGMTQPNASSSPASSTHSS
PGTSPRAATPRSIYTDITRSLRRGDEAQSKHAAYAAGCAQLVAKRKLKDVFAISSSQFAA
QRKIALSCCGAEWEEGWEAVCARLAKAGDHEGAARHAFFSGQLEKSMGYLRLCKDENLRM
LAPIVAAYLAQKDSLRGSESNYASLCRSLSSDVETPWVRAMFAYLATSDWRELVDETGLA
LRDRVAVALRFLSDSELIPFLQDIGDEALSSSDLEAVVLFGLRNDGLKLLSSYVDRTADV
QTVALACSFTSPGMIRADMRVTRWVETYRSQLDKLQLYAARAMFDAARGRRARAALEQAR
AAGRQAEAKELVAAMRKTAPPQILIRCQFCSTNISPPKGAFLPGEQREGRKGDGPRGHKA
SLCPSCSKQLPACSVCLTRPSVSAFEADGPATLSWCIRCRHGGHASHLLAWFETSRVCAV
AGCDCECSSRQ