Protein Info for mRNA_2222 in Rhodosporidium toruloides IFO0880

Name: 10590
Annotation: K14801 TSR4 pre-rRNA-processing protein TSR4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1158 transmembrane" amino acids 248 to 269 (22 residues), see Phobius details PF00443: UCH" amino acids 260 to 685 (426 residues), 27.6 bits, see alignment E=2.1e-10 PF04194: PDCD2_C" amino acids 1013 to 1147 (135 residues), 101.1 bits, see alignment E=7.8e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1158 amino acids)

>mRNA_2222 K14801 TSR4 pre-rRNA-processing protein TSR4 (Rhodosporidium toruloides IFO0880)
MTGVMGIPLNPLAMPVEVGENGSEVRGSPAPLKLSSVCGLPPRLTHPLAMAGLNTEQQAA
FQTLLEFGCSETDARKAVLRFGGNVAAAANWIYDGAVEGPAAADDDAPPPLISTDAELPH
PSTLGQPPPYSGPELPPFGPAAPAVEQKNLIDLTNDDEPPPAFAPPRLLPAPHPSPTLGP
SNAPTSGGADLSKAIKASQTAADDQDADLSKAISLSMASLGSTDEQAVSEVEKIKPEDRI
RKGNSPPVLRATSAFMSGLAAFLQALYAVPSFRNGILSYRLPENRQHDGLAVADFKDYWK
GDAGISSLGMPIPVDGEQENRFTRLVALQRLFALMTETKRSFLHITEVVRAFGLRESDFK
QPGGAWVYKVLEVHSTIVDDLRLAAGEEAQYRLSQGVSPEEAEQYEQKATSRFIFRGRVV
TANEHLGAPLPPNDDDVHSNPRLSLPLNPSADPPEDLFRLLDKQLVTSNGSDNLLHLLTQ
VPTVLFFHIDRMTNVTSLDSFGSGNNSLQKRVFRPTPTGKEDVWLDRYWVKNRVRIHETR
LEIAKLDAELEEVRKQRKAIVVTEDGKDFQELVRATVAYCKSAKAEAGNVEREERQKRMR
EDWEKVEEELKQAVDAFDTQISDVSLRIASAFDSPDMHKIGPYRLTSFVVRNGLNGRGTA
WSVVCDDDGKWWRTGDLDKKEVSLEEALGDPSGLMMDAGSTFFFYSKVDEAEEEVEVPPH
LKNAAARDNIEFALTLPDALADVVASWNLPPLSSLEPEAIQIPLGETADDDAETVKDISL
DTPPPDDVMIDEQAANQVDTPMSLEESQQAGEFPAMQLRGGATIEDDDGQEDGVELDGAD
EEEESDYDDEIDEDEVELGLLQPMPVKKEDWDIDYAVGKIGGKPVWLDPRSPLAPEDVEC
GACGRTMSMLLQVNSPDDTRPHAAARSLYVYACRTSGCLAKNPSQAVRVWRTQMESPNAF
FPHTEETLKERTRLEDALDAATALASAPSSSAKSWPEFDIAAEPEPYEESYLPSENAPAA
EAEEGTEDAAATDTKTGVDSAFLHFQERIEREPKQVLRFYRLPGIEDPQPLWASEDKIRP
EQVPTCELCRGERKVEFQILSTLLTSLDDDSFDFDSILVYTCANHCPIPPREGGKTGWQV
ECAFKQDFAAAGVKFGRR