Protein Info for mRNA_2239 in Rhodosporidium toruloides IFO0880

Name: 10607
Annotation: K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 PF00494: SQS_PSY" amino acids 30 to 322 (293 residues), 147.4 bits, see alignment E=3e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (349 amino acids)

>mRNA_2239 K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6 (Rhodosporidium toruloides IFO0880)
MRTSAVVRQATAPGSREAYDKALLYATDLVRRADHESIYASYFYPSSVRPAYLALRALNV
ELAGLPDQVSNQLVGRMRYQWWKDAIKGLYEGRPPPHPLLNLLSQLPQRPFLSSYHFTRL
MSTREANFMNPTFHSLQDLADYSAGTQASLLYLLLQATAAGSAPPASQGFSTAAGLRHAT
PFQHTGAEHEHDAGASQSGQTLKEADDLTLDHAASHLAVAITIATLLRSIPHHAAKRTNV
IPLEVAARHNLREEALFRSGPVAEGLQDAVAQLAGIAEAELRTARECFEGTKGVPARAVP
VFLSATPARSYLARLASPKIDYNPFDASLHKRYWKLPFQVWGDARNKRF