Protein Info for mRNA_2240 in Rhodosporidium toruloides IFO0880

Name: 10608
Annotation: K13291 TUT terminal uridylyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1176 transmembrane" amino acids 165 to 185 (21 residues), see Phobius details amino acids 197 to 215 (19 residues), see Phobius details PF01909: NTP_transf_2" amino acids 56 to 100 (45 residues), 28 bits, see alignment (E = 2.2e-10) PF03828: PAP_assoc" amino acids 265 to 331 (67 residues), 63.8 bits, see alignment 1.3e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1176 amino acids)

>mRNA_2240 K13291 TUT terminal uridylyltransferase (Rhodosporidium toruloides IFO0880)
MGGSSSSGGGSAHWRDGAASGVYAHAPELTHYLQSTFVPSVVPQQDEYDAKEQARQYLEK
LADQVSPGAKLLPFGSMANGFALKNSDMDLCCFLAKDAPVRSPSELVELLGRLIEQETNF
YVKTLPRARIPIIKLTMPPTASVPAGMACDIGFENRLALENTRLLLTYAMVDARLRTLVL
FLKVWTKRRKINNPYRGTLSSYGYVLLVIHFLAHVKQPPILPNLQRLPLPESANLDELTF
EGHDISFFDDVDALPSVFQTTNGDSVGELLIDFFRYFSKEFNYAGLVVSIRSEAGTMQKT
TKGWHIDIETDPEGTVRDQHKLCIEDPFQLDYNVARTVTKDGLYTIRGEFMRAFRILTTP
SRSPEGIGAVINSLCEEREDYLLIHPSDDPYGRLHAPLHHQSPHYGSHAQQKSPRRRSAP
SPRMAPTLYGAGLHHQPPPLGQASMSRDHPLWAAAMNGTAAGAVHQPPQLGRAIAGLAIT
SESSGGEAVVSAGPASENGDDAPHLVLGDAFEPSTGTGASGMYPHPTSIYALAGAALRHP
HAHHQPLVYPYGSNTGRLAPQHMSTPPTVAGSPPPSEAGGNSFGGHERRASWDGELKDGS
AAGAERGKLRTPSMSGAGGGGSYDLHRFFQNPPSSSMSDAGGPTASSPPVTSASTNARGS
VSLTAPSSPELAAQSAYFAGHPTSHYSTYGGRSSQYRYGASAASAAASGSYAHVGPRLAA
SVPRNPHTAHHAYTNPYASAPVPYPLASTSTSTTSSAYTSPNPAPAAYPLGANGNTASPA
APAPPAPIFPEEDREAIALANSITFGNFPELLPLPSYAHYHASGGSAAYLAGAGGWGSTP
YGISGPMRVGNRTHGPGGGPSRGGPRQSLSSTAEDEDGESAAEFEDEADAAEIDERGRER
RPSTDETLSEGRAGRSRGRSVPHVRMGPDGRETLLFGAIEVTLPKAEDTDDIDWEDESDD
DLRRSPGNGGADGQAVLDERDQDEREVAFLGPTPSAAPSAPQTTAASTEEIPPHAPRSIP
VLTTQPPTPAKAPHDPAVDLASPSRASRSRTSSPLLETSGSALDDEMTPRPASPVTATAN
GWATLPHPALEHVSNSADVPAVVTVGTPETTSPASPLVNGIAAIRLSDAENDDVPPMPSS
PRAPRSPKAEKRARQKERRRSSSSTVSSSSPVPQDA