Protein Info for mRNA_2263 in Rhodosporidium toruloides IFO0880

Name: 10631
Annotation: K02882 RP-L18Ae, RPL18A large subunit ribosomal protein L18Ae

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 PF01775: Ribosomal_L18A" amino acids 5 to 127 (123 residues), 187.2 bits, see alignment E=5.1e-60

Best Hits

Swiss-Prot: 70% identical to RL20B_YEAST: 60S ribosomal protein L20-B (RPL20B) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 81% identity to ppl:POSPLDRAFT_135084)

Predicted SEED Role

"LSU ribosomal protein L18Ae" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (172 amino acids)

>mRNA_2263 K02882 RP-L18Ae, RPL18A large subunit ribosomal protein L18Ae (Rhodosporidium toruloides IFO0880)
MGRFQEYQVIGRKLPSDKEPQPKLYRMRIFAPNEVVAKSRFWYFLRKLRKVKKATGEVVA
VNVISEKKPLKVKNFGIWLRYDSRSGTHNMYKEFRELSRADAVHACYQDMAARHRARFRS
VQILRVAEIEKTADVRRPNIKQLLTPNLRFPLPHRVVKSRSLFLANRPSTFY