Protein Info for mRNA_2274 in Rhodosporidium toruloides IFO0880

Name: 10642
Annotation: KOG2352 Predicted spermine/spermidine synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 PF13847: Methyltransf_31" amino acids 50 to 168 (119 residues), 45.4 bits, see alignment E=1.1e-15 PF13649: Methyltransf_25" amino acids 55 to 137 (83 residues), 41.4 bits, see alignment E=3.1e-14 PF08241: Methyltransf_11" amino acids 58 to 165 (108 residues), 47.9 bits, see alignment E=2.6e-16

Best Hits

KEGG orthology group: None (inferred from 54% identity to ppl:POSPLDRAFT_88860)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>mRNA_2274 KOG2352 Predicted spermine/spermidine synthase (Rhodosporidium toruloides IFO0880)
MTDLLPEKNAEYGTQKYWDDRYSREADDSSFDWCKSYRDIRHLVHRFIPQKDARIVMLGC
GNSTLSRDMYDDGYRNIVNVDYSSVVIEKMRRVNEECEGMTWTVGDVRALPFEDQSVDVC
FDKATLDAMLTSEKDPWNPPAEAVAAVKGEIDEVIRVLKPSGTFLYFTFGQPHFRKPLLR
RKGWTVEYEEVGEGFAYYWFWMRRES