Protein Info for mRNA_2294 in Rhodosporidium toruloides IFO0880

Name: 10662
Annotation: KOG4131 Ngg1-interacting factor 3 protein NIF3L1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 PF01784: NIF3" amino acids 43 to 312 (270 residues), 182.8 bits, see alignment E=4.8e-58

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (341 amino acids)

>mRNA_2294 KOG4131 Ngg1-interacting factor 3 protein NIF3L1 (Rhodosporidium toruloides IFO0880)
MLARQIGSHFTRAIATPPPTLARTFSSSHPHRMPSPTLTHLQTALAKLTPLELAESAWDN
VGLMAEAPEARDGKLAEGEARKVYLCIDLTTAVCSEALSDPSTTAILSYHPPIFRGLKSF
TLANPLQASLLRCISSGVSVFSIHTAADNCVGSNNDFMASGLLQAAGVETDADGMVRPGQ
GKGSKALKEASSPPEGHEGAGHGRFVDLLEGGGRKLTRDAAVQAVKKRLGLKYIQAAWSS
SGPAEIRTIAICAGSGGSVLGGVKADLYLTGEMSHHEILAANAAGSHVFCCNHTNTERPW
LAFFAPRLQAAMNETAAGDGASAPKYEVVLSKEDKEPLQVV