Protein Info for mRNA_2297 in Rhodosporidium toruloides IFO0880

Name: 10665
Annotation: HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 transmembrane" amino acids 297 to 317 (21 residues), see Phobius details amino acids 338 to 363 (26 residues), see Phobius details amino acids 384 to 406 (23 residues), see Phobius details amino acids 412 to 428 (17 residues), see Phobius details amino acids 440 to 458 (19 residues), see Phobius details PF01553: Acyltransferase" amino acids 41 to 145 (105 residues), 37.9 bits, see alignment E=6.8e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (719 amino acids)

>mRNA_2297 HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593 (Rhodosporidium toruloides IFO0880)
MVFGPTHTFLRGLASYAFASFWYRVEVHTRVGGLEVGELVPEEGTPMIVVANHWNSAADV
AVLSCYFPHYRKLHYWAKSTLFAPGLPRKILLDAGNLPVDRKTKDNQKLFASSFDALKAG
EAIAVFPEGGSYTVHELPALKDGASWCALEYVKNLRDPRTRRVLSDGSTAKTDPKDVVIS
IAGIAYSDKTKYRSCAVMEFGPNIPVEPYIEEFLVSPKTAVKKLTAKIHEELVKVIVNAP
DWESRHAATMARKILWPDDKKLPLRHMREIDQTLVDLFAAPNPSASLRRLRRLLNVYRDA
LYSTGVTHLSLSSLPLPATLDPSVPHPLPTRMRVLGTVILSTIACLIRLPFFLLPLIVHL
PVYLFARYAASNALEEDQAQNKVALGLVLALVTYATFFAVACALLWTSIPWGGALLVAIV
GTIAFVAYHNRLIDDNYRKFQRLLALWTVLFALWTPVAQSEASHFLHSVHPSLSPAPPRP
DADGQYVSLETEDETDALMGATTTDHEDAENGDEGSGREGESKGRRKPLPSPALFSEQDH
LLGNFPHPHLPGSHHHPSHQPNRPASPPVNGTRTPRSRTSTAAGSTRTSEETTIEMPPLA
SGIAAHEEGAPVTRAQARLPRRSRVREVRALLRLRAETVARLREALFDSPADGDDEFEEE
FVEASRLYAGTNGNGAASSSASTRFEGRENASRLLARQVGERMKELGWRGAGLGSGKLA