Protein Info for mRNA_2305 in Rhodosporidium toruloides IFO0880

Name: 10673
Annotation: K01082 cysQ, MET22, BPNT1 3'(2'), 5'-bisphosphate nucleotidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR01330: 3'(2'),5'-bisphosphate nucleotidase" amino acids 6 to 351 (346 residues), 405.4 bits, see alignment E=8.9e-126 PF00459: Inositol_P" amino acids 39 to 348 (310 residues), 186.8 bits, see alignment E=3e-59

Best Hits

KEGG orthology group: K01082, 3'(2'), 5'-bisphosphate nucleotidase [EC: 3.1.3.7] (inferred from 56% identity to scm:SCHCODRAFT_68271)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.3.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>mRNA_2305 K01082 cysQ, MET22, BPNT1 3'(2'), 5'-bisphosphate nucleotidase (Rhodosporidium toruloides IFO0880)
MSTIRYSRERQIALSAVLKASLLAQKVQEQLVGSGGVEKRDKSPVTVGDYTSQALVSSLL
ALHFPADRIIGEEDSSDLRQPSQSAIKDQIVRLASEAMSESLPLEEEERAWEGVKAGEPK
TEADWLAAIDRGNSEGGASGRHWALDPIDGTKGFLRGGQYAVCLGLIEEGEVVLGVMGCP
NLPLDPKNKDGEKGALFVAVKGEGAFQRSFTSSTLTPISMSTLTSLSSASFCESVEAGHS
DHSTNARIAQLLGITKDSVRMDSQAKYCSIARGDGDIYLRLPVSETYQEKVWDHASGSLL
VAEAGGVVSDMHGKPLDFSLGRTLRGNKGVVAAHKDWHAKVIEAVQQAVGEEKK