Protein Info for mRNA_2309 in Rhodosporidium toruloides IFO0880

Name: 10677
Annotation: K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details PF04387: PTPLA" amino acids 93 to 240 (148 residues), 161.7 bits, see alignment E=6.6e-52

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>mRNA_2309 K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Rhodosporidium toruloides IFO0880)
MPPKTVQTTPSKGKPATARSATSPATTLYLTAYNTASALAWGYVLFRVAVHMSGGDGYTG
IKEWAGLQGVGETFRKRATGAFDEVGDVVKWVQTAALLEAVHSATRLVRSPLGTTVAQIA
SRLALVWGVCEFFPQVARSPFYVSMVTAWSFAEIIRYTHYATGLQGIKIKALEWLRYTAF
YILYPVGAGSEAALIFFSAPHAKEQYGTLAMYAVYILVAGWPPALAFLMSYMHSQRRKHV
SGSSRSSPVTPKKTGVAPKDITSAVTPENVLPEALGATPARSTRSKTRKSE