Protein Info for mRNA_2316 in Rhodosporidium toruloides IFO0880

Name: 10684
Annotation: K02889 RP-L21e, RPL21 large subunit ribosomal protein L21e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 PF01157: Ribosomal_L21e" amino acids 1 to 101 (101 residues), 158.3 bits, see alignment E=2.1e-51

Best Hits

Swiss-Prot: 71% identical to RL21A_SCHPO: 60S ribosomal protein L21-A (rpl2101) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02889, large subunit ribosomal protein L21e (inferred from 77% identity to lbc:LACBIDRAFT_181769)

Predicted SEED Role

"LSU ribosomal protein L21e" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (160 amino acids)

>mRNA_2316 K02889 RP-L21e, RPL21 large subunit ribosomal protein L21e (Rhodosporidium toruloides IFO0880)
MPHSFGMRARTRDMFKRDFKSKGMIPLSTYLKEYRVGDIVDIKANAAQQKGMPHKYYHGR
TGVVYNVTPSAVGVIVYKVVGNRYLEKRVNIRIEHIKHSKCRDDFLNRVKSNAAAKKEAK
AKGEHVVLKRLPAAPRESRTVSTENNAPQTLAPIPYDTTI