Protein Info for mRNA_2320 in Rhodosporidium toruloides IFO0880

Name: 10688
Annotation: HMMPfam-Carboxylesterase family-PF00135,SUPERFAMILY--SSF53474

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 651 transmembrane" amino acids 37 to 59 (23 residues), see Phobius details amino acids 63 to 63 (1 residues), see Phobius details amino acids 65 to 66 (2 residues), see Phobius details amino acids 68 to 93 (26 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details PF00135: COesterase" amino acids 260 to 297 (38 residues), 26.7 bits, see alignment 1.4e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (651 amino acids)

>mRNA_2320 HMMPfam-Carboxylesterase family-PF00135,SUPERFAMILY--SSF53474 (Rhodosporidium toruloides IFO0880)
MAQQPSHASKGAPISSPTSHHFALSTSLKLRNAPLRLPALVLIGGLTVVAIGAWPFLALG
SLIPLVGLVSLPTLLACTLAILLFLPATLYLLFAQPGSPSPHLLPHLPVLSPLRCIRLTL
FASQVLLDAYRSSLLPLLLDGLTKRILILGGREADQVVRENIVYIPSDPPAYPEALRLDV
YRPELPPASGSDAPLAPVIILLPSPSYRLTHLRSFPAASIALRLRQRGICVVVPSLTSYS
STNPDVQDGRAIERMVAETREAVKWVGENVERYGGDRERVWVMGCGAGAHIASLTFVQSA
VIAARNAFAAAEAKKADERKKKEGKVTVDDSRGSSLLGSPAGAEKRALRGQASGLSRASP
PGPTFDDSDDDPVEAILRQSRSSHAEPADPEDLALDVQDSEAELELPSGIRSAQLFTLDS
LAAAYDDKPAADIYANEPETSFQSLASFRLPRGGKKVKVRALLFVGGTYDVVKQGRWEER
QGVEEVSSLLRVCDSSVRDILQACPSHLLYAASPLVSSAQSPSLSSLLPAQTLLIHGGAD
YLSPYSQSVLFRNLLVGVGCKSEDVSVRLFKKMSALGGVESESWSAFSRSHGGLKRPRMA
CASTGLRDSEMADSLVLPASSPFATFLRPRPSQVSCTAPNTLRSSRPRSSR