Protein Info for mRNA_2321 in Rhodosporidium toruloides IFO0880

Name: 10689
Annotation: K14807 DDX51, DBP6 ATP-dependent RNA helicase DDX51/DBP6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 PF00270: DEAD" amino acids 114 to 365 (252 residues), 132.3 bits, see alignment E=2.6e-42 PF04851: ResIII" amino acids 139 to 274 (136 residues), 35.3 bits, see alignment E=1.8e-12 PF00271: Helicase_C" amino acids 416 to 538 (123 residues), 77.7 bits, see alignment E=1.3e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (607 amino acids)

>mRNA_2321 K14807 DDX51, DBP6 ATP-dependent RNA helicase DDX51/DBP6 (Rhodosporidium toruloides IFO0880)
MADGAAGDEEESTLIPTAPGAVIDQPAPARSPSPAAPASPPAPLYRLPSATRPAPPSAKI
LSALNVHESVRDKQVVDPTRKVPIGDKLGEDGTGVSERGRKRLKGDMGVEEWFAVQTAVL
PLLLPPSAQLPALYSPFNPPRDVCVSAPTGSGKTLSYVVPIVETLQQRVVTRLRALVLLP
TRDLVGQVRETFEQYAKGTGLKVGVATGQHSFSHEQSVLVGDDVPADIEGGASQVDILIA
TPGRLMDHLKSTAGFSLQHLRFLVVDEADRLLTQSFHDWLPTVLSALKPSFSAPALREDD
DLLSVKREKRAKRSSTTAKKADALAPSWWDAEGKVGRVASDLDERCHGSCQKLLFSATLS
RDPANIDALHLHRPVYISVEDALDPHAEGEAIDSELKFTFPAELSEHMIISPASYKPLYL
FHLLHTLSISSALCFTKSVEAATRLAKLVEFFEEARAASADGSETKKVVVKAYSSELAAS
ERHKVLREFKKGEVQMLICSDLIARGNDIPNVSHVISYDIPVDMRKYVHRVGRTARAGNK
GDAWSLVEEQEVAPFRSIMSKAQHYQKIERVKVKDKVVEPFVPAYQVALERLKQYFATGR
TREQSTA