Protein Info for mRNA_2329 in Rhodosporidium toruloides IFO0880

Name: 10697
Annotation: K10908 POLRMT, RPO41 DNA-directed RNA polymerase, mitochondrial

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1343 PF14700: RPOL_N" amino acids 360 to 687 (328 residues), 329.8 bits, see alignment E=2.4e-102 PF00940: RNA_pol" amino acids 815 to 1343 (529 residues), 592.1 bits, see alignment E=6e-182

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1343 amino acids)

>mRNA_2329 K10908 POLRMT, RPO41 DNA-directed RNA polymerase, mitochondrial (Rhodosporidium toruloides IFO0880)
MLRTQLRLSSATCRLPLTPSLTRISSRHAATAVRPPPPAEYVYDGGRPQLYSLPTLPPMP
PPLPVDVEPTATRRDTRYGVAVEPGVTLAHHAPAAQEQLAILGVCLSTGNLKRAEEIAKR
IVVAWKRAGEAGQLSNVLSPRIHADFIKAYLGRAMQPGVTPAEAKDAVHRTWTYFDHLFE
PQWNVVDPITQRKHGVSGAVDATVIATMLKGFTALGPAFYNPSPESDPERILRPITAILP
LMPKAGVELDEVLRDPIFALDAPIYFGSVTRSAAVNALIETGEGRSGWSRFKDLVAHAAA
EVKRFEEGRDAEVPAEKENVAEVAPVQGDKGENVSLGMLKHNLRGLAVNTGRDGLPLSAR
QRLLEESSYDAARQLYIHSREQLAQIGKDEGGLQSNWIQQIMFDWHKKLVKTLEDIAAGK
RKDIDSGFRDRELEPFLQLLPVDKLALITIVEVMRMCGSGTFAADGMKTTRVVLNVGRAV
ENEHHAEALRDSLSTKKLQEELAKVESRGTINPDGTVTPRRQTESLGILWRRELAKREED
GDSTWHPNWTQTIRARVGSVLVSALMEIAEVERTIKHPKTGEQVSEKQPAFSHAYQYMRG
TKLGIIKLNPAVSERLDKDPLDITLHPRFLPMLVKPKPWLTWNSGAYLLHQTPMMRTKES
EEQVQYLQQASDNHTLDIIFSGLDTLGAVPWKINRKVFDTVVQVWNSGDAFADIPAAAQK
LEIPTLEIPKGVMSDPRARDNYRRRVRELMQQKRAAHSMRCDLNYKLEIARAFLGETFYF
PHNLDFRGRAYPIPPNLSHIGDDMSRGLLLFAESKPLGERGLRWLKIHVSNLMGFDKASF
DEREAFTMEHLEDVFDSADNPLEGRKWWTKADDPWQCLATCIELTNALRSEDPTKYECGL
PIHQDGTCNGLQHYAALGGDINGARQVNLDIGDRPADVYSGVAQMVQEIITRDVEAGVEE
AKLLDGKITRKVVKQTVMTTVYGVTFIGAKNQIERQLKDRGDVPAERLYKCSIYLGRLVL
DSIGDLFKGAAAIQTWLNRCARLIAKSIPPQRIEAALKQEKPGKNKSKKALALSRIPKEQ
MTSVVWTTPLGLPVCQPYRRPKKKQVQTALQTVHIWDPSIPAEVDPRAQATAFPPNFIHS
LDATHMMMTALACKGKIAFASVHDSYWTHACDVDEMSTILRDTFIDLHSQDILGRLRDEF
IHRYAGHVVPVSKIPPGLRAATAAEAIKEAEAPPKQVDSQAASKLLEELEQEDGVEELTL
FNRPKVERAKSKKATKKADAESGEGAAEAEVVESQAPQDMAIGKLFAATVDSKIVYLRDV
LPYPPGKGDFDLERVRDSPYFFN