Protein Info for mRNA_2332 in Rhodosporidium toruloides IFO0880

Name: 10700
Annotation: KOG1134 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1080 transmembrane" amino acids 27 to 48 (22 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 380 to 409 (30 residues), see Phobius details amino acids 423 to 450 (28 residues), see Phobius details amino acids 472 to 497 (26 residues), see Phobius details amino acids 535 to 557 (23 residues), see Phobius details amino acids 577 to 597 (21 residues), see Phobius details amino acids 603 to 619 (17 residues), see Phobius details amino acids 640 to 660 (21 residues), see Phobius details amino acids 666 to 686 (21 residues), see Phobius details PF13967: RSN1_TM" amino acids 27 to 177 (151 residues), 133.6 bits, see alignment E=8e-43 PF14703: PHM7_cyt" amino acids 201 to 365 (165 residues), 121.3 bits, see alignment E=8.7e-39 PF02714: RSN1_7TM" amino acids 377 to 658 (282 residues), 229.2 bits, see alignment E=9.3e-72

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1080 amino acids)

>mRNA_2332 KOG1134 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MSDAQEATNAIFDAYESRLTRIGGPAVGIQLALMVGVGLAAIIGFSVLRPNNSVVYQPKL
KYAADDKRPPKIGKGIFDWVRPVLTLKEQEMMALMGLDSVAYLRFLRMCRNMFICIAALT
CAVLIPINVVYNLRYVKEDNRNYLLILTMSKVKGNWLWAHVVATYVLTFMAFFFIWTNYD
AIVRLRWQWFRSPAYQDMLHARSLMITQVNKKFQTDAGLAGLLASLNIPYPTSAVHIGRR
FGALPALIKKHNEAVEELEHVLTTYFKNPDRLPTQRPVKHIGGHMGLGGQKVDAIDYLTE
KIKRLEQRVDVARAQINERKAENYGFASFESVPYAHIVAKTLRGKRRHGAHFDLAPQPKD
LIWDNLQMTDAARTKNKFFGGILLVLLCGFYTIPLVAVALLANLAALSAYVGFINTWVSD
YPWLFSAFVGIVPPILTFLLQMILPMIIRWIASLQGATTHSQSDRIVTARYSAFLFITQF
IIFSLLGVIVQVVSQIVIQIQGHASASKIWDYLQTVPDKLQNTYMIQSTYWLTVFPLRGA
SACFDLAQIISLLLVWFKTRMFGRTPREIREATKPPYFDFPVYYSNHLLVVAVAMVYAPI
APLVGLFGAGVFAVSYYVYKYQNLYVSVPRTETGGRLWNVVVNRVLTALILMHIFMAVSI
GLQTNWFYAIALAPPAVCVLIFKVILDRKFIHRFRWYIPGEVEMAEVHMHRADARKNRLE
KRFGHDALSEPLWTPMLHKNVQHLLPTIYNGRIEQGETKVGGKTVEQNMAGGLTFAMMEA
HDLTVDRAAYLREREEDEMTISTAFNNRAHRPGAPSVAGTEVDDYFAGRHAEYLKHGAAM
SRSGTPFNPGTPEELPAELQRMPTYDDQTPGSFFGMDGRTTPNASTDNLIQQAQPYQYPP
SYSSPDRTLPHHARGMSGSPRIGGPPVGHRTNASQTSFSSLSGASAYDPGMQQAHPLDLA
QYSRQGPPPNVGMARGPGARSASVDSYGGQWQPQHAAARSQQSIDYAYGGAAPRGDPRRM
SGPYGGAGGPQERLAHGVSAAPAAYGAAAYADFGSGGAPRYVPLNPDGTESAEYLPQRRR