Protein Info for mRNA_2336 in Rhodosporidium toruloides IFO0880

Name: 10704
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 52 (24 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 309 to 329 (21 residues), see Phobius details amino acids 340 to 362 (23 residues), see Phobius details amino acids 397 to 424 (28 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 2 to 435 (434 residues), 295.7 bits, see alignment E=2.9e-92 PF07690: MFS_1" amino acids 13 to 355 (343 residues), 55.5 bits, see alignment E=4.9e-19 PF00083: Sugar_tr" amino acids 14 to 439 (426 residues), 335.4 bits, see alignment E=5.8e-104

Best Hits

Swiss-Prot: 45% identical to STL1_YEAST: Sugar transporter STL1 (STL1) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 56% identity to scm:SCHCODRAFT_84345)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (505 amino acids)

>mRNA_2336 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSGLISAPQFISVFPACDAAVQGAYKASVLQAFYVAIYEVGCLGGAIFALMFGDRLGRRR
MMYIGAFVLLIGVLIQVTAFRGHWAGGQFVIGRIVTGLGTGFETSTIPTWHAECAKAHSR
GFAVFIEAAMISTGTMIAYWIDFGFSYLPDSTSWRVPIALQAIFAIALVALITFLPESPR
WLVSKGHYVEAQRVIAALEPAHFTDEAVLLQLKIIGDSLEGQTRQRKRDLITNGPTQHFR
RALLGSSSQFFQQVGGCNAVIYFSTPIFEEYLGLGRKLSLILGSVLATVYALSACISFPL
VDKAGRRKLYFIGTWGQALSMFLIMACLIPSKETGASKGAVVGIFLYLTFFGFTWLELPW
LYPAEINPLKTRTVANAVSTINNWLWNFTVVMFTPPFLASTAVGTFAFFGAINLCFLPVI
WYFYPETAGRSLEEIDLVFAKGYVEGVSYVKMAHDMPKMGPKEVQAEWARLGLDPEDEMP
TRPSDAERAIGGESIGGTTAANAQV