Protein Info for mRNA_2370 in Rhodosporidium toruloides IFO0880

Name: 10738
Annotation: K01410 MIPEP mitochondrial intermediate peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 833 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 458 to 478 (21 residues), see Phobius details PF01432: Peptidase_M3" amino acids 323 to 823 (501 residues), 416.1 bits, see alignment E=1.4e-128

Best Hits

Predicted SEED Role

"Mitochondrial intermediate peptidase, mitochondrial precursor (EC 3.4.24.59)" (EC 3.4.24.59)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.24.59

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (833 amino acids)

>mRNA_2370 K01410 MIPEP mitochondrial intermediate peptidase (Rhodosporidium toruloides IFO0880)
MMRAAFRRAGRAIRPSPTATPRLSAPSCSCGFRTLAAKQAQTIDVQPPTPTNKQLHQAFD
TPSSSYTASPSSVAPTGLFGQPALTSPDDFPGLAHRTTLRAKILVNRLCRPAPPPQSLEG
AERAFLDMVKNLDRLSDLLCGVIDLAELVRNVHPDRKWVEGANEAYEQLCEYMNELNTHV
GLYQVRCVVTKLARQLTFAIPQGLKTLHSMLPPETPSKSPALFAAYAVATPFIRDFEKSG
IHLPSEQRAEFVSLSTAILQLGRRFLQNAAEPEGEDLVKVSRKSLDAAFGPSLAQRLAGD
LPDSQQDVLIDPLSWEGRIIARHHPSASMRRDLYVASHSSSPSHVETLEDLLLARGKLAR
LVGRTSWADVALEDKMAQTPEAVMGFLDALEKHNRPLAQKDLEVLRRAKAAHLAKTGTGG
GRGKEDARVIEAWDRDFYTDLSAAANGTANALPDMSPFFSVGAVFAGLSRFFTALYGIRL
KVEDVREGEVWAKGVRKLRVIDEDEGRIGTIYCDLFSRQGKAPGAAHYTVRCSRRVDDDD
VEGDFEGRSYAEVDGVRLERDQLEGLVVQPVEWKGRPGKHQEPIVVLVCAFGSADASGRP
AFLQWHEVETLHHEMGHAIHSMIGRNDYHNVAGTRCATDFVEFPSVLMEHFVSSPAVIAL
SAKHYNTGHPLPTEIFETLLQERSRFSALETSSQIMMAALDQSYHSSAVADSATSGSPFD
STAALAEVQDRYHVIPYADGSTWQTQFGHLFGYGATYYSYLFDRAIAAHVFSVKFAENPL
SRERGEELKQGVLRWGGGKDPWEMIGGLVGSEKVARGGRAAMEEVGKWGILEG