Protein Info for mRNA_2402 in Rhodosporidium toruloides IFO0880

Name: 10770
Annotation: K07870 RHOT1, ARHT1 Ras homolog gene family, member T1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 769 transmembrane" amino acids 704 to 724 (21 residues), see Phobius details PF08477: Roc" amino acids 5 to 120 (116 residues), 39 bits, see alignment E=4.1e-13 PF00071: Ras" amino acids 6 to 168 (163 residues), 75.6 bits, see alignment E=1.6e-24 PF13202: EF-hand_5" amino acids 195 to 214 (20 residues), 17.8 bits, see alignment (E = 8.6e-07) amino acids 315 to 335 (21 residues), 17.3 bits, see alignment (E = 1.2e-06) PF08356: EF_assoc_2" amino acids 223 to 309 (87 residues), 105.4 bits, see alignment E=5.9e-34 PF08355: EF_assoc_1" amino acids 345 to 458 (114 residues), 99.6 bits, see alignment E=2.7e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (769 amino acids)

>mRNA_2402 K07870 RHOT1, ARHT1 Ras homolog gene family, member T1 (Rhodosporidium toruloides IFO0880)
MRDVRVCLVGDEGVGKSSIISALIKESFVRLAPRTVLPEVTIPPAVTPGHNVTTVIIDTS
PRPEDRSHLVNEIRKAHVVAIVYSIDNPNSFDRVPTYWLPTIRSLGVNVPVILIGNKIDL
REGQVTNQALEDEIVPIMQEYKEVETCVECSALLPLNISEVFFFAQNAVLHPTAPLYDTR
QHTLKPAAVAALSRIFRLVDADKDGLLSPDELNDFQRLVFDAPLQSREIEGVKEVVEEMT
DGSGVEEGGLNEEGWLALHTYFIQKGRLETTWKALRCFGYGEDLMLREEFLYPRFDIPSD
CTAELSPRGYQFFTDIFELFDQDRDGALSPSELDNLFSTSPGNPWAAGGFPETTLTTPEG
AVTLQGWLAQWSMTTLLEPRVTLSYLAYLGYPHSSASSSFSPSSYPPTPSPSASTSARRN
PFSSTSTSSRDSSPSYQLLPTTSALQITKPRRPSRRKGTPVERNVFLAYVLGAAGSGKTS
LLRAFVGKGFGEDEEGLAAAVGGAVRGKAATWPRKTGATAGGVEVFAGGEVLEGPGGARA
LRGALSSGRGKGKSVVNCVEEGGGERYLVLQEFGSTYESEVLRSKKKLELADVLVFVYDS
SDTNSFSYVSNLRQQYKLDDIPTIFVATKSDLDLAQQRHEVQPDTYCRKLSLRVPLAVSV
KRGELANLYHTIVRIAIHPLSALPYGPDRSSASSLLGFPVTRTQFYLCASAGLTATVAVG
LVWWTRARIVTHAAGGGASAGSGGHGGGAAGVVGGASKGLIGWLGSLVR