Protein Info for mRNA_2433 in Rhodosporidium toruloides IFO0880

Name: 10801
Annotation: K10866 RAD50 DNA repair protein RAD50

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1351 PF13476: AAA_23" amino acids 6 to 235 (230 residues), 112.5 bits, see alignment E=4.1e-36

Best Hits

Predicted SEED Role

"DNA double-strand break repair Rad50 ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1351 amino acids)

>mRNA_2433 K10866 RAD50 DNA repair protein RAD50 (Rhodosporidium toruloides IFO0880)
MSSLDKLAIRGIRSFDSNEISVMQFYSPLTVIVGHNGSGKTTIIECLKYATTGDLPPGSK
GGAWIHDPAIAGTSEVKAQVKLRFNNLRKEKMLVERRLQVTKKKTASGLSMKTLEGVISY
ADADQVDKKKRQTLSTKCANIDEEVPTQLGVSKAILQNVIFCHQEESNWPLSEPAALKKK
FDDIFEATDYTKVLDEIKRIRKDQNIDIKVDKEKLAALKTDRDRAFRLRENLKKVSTQIS
VKQATYDELEEKIAKLVESNKKFFTQASKYQDIIGRVDTLRERRKIHEENLNNLLNGVKQ
LPDSEHELKTKIENHEADLDKARSEREATKQELGDEQDTLANFERKRSAAQTTHGRLLAL
KQRHQAMLEARKSLIRELSEKHEIPGYDHELNEREMQEFEEKMEDVIVSQQRKIEKIKSE
ARATENKYQDEIQALKSARAADERAKASIADQIRAADTRIANISRQLDATTTTVADIMYQ
ESLLAEEKERRQKVEDQIKTANYTQQLRDKAREAKDLEERRDALHNELAGLNAQANTRAR
LQLRRTERKRKDEAIASLIDKSAASFRKFAKADPQRESMEAQVSALVQTLDQDVTFAERA
SRDAARELQNIETSVSIAKKKIKDLKQAAEGEDVCSSPFPRLYLPVLRLQMPRPRLRTAC
AGSTRRRRPCRRRLRRRRKSSLRSPRATVSAGVREASLTGESSRREVSDFASIQKFYDRI
LNGAKKNHVCLGCDRSVSRDELPDLERYVMRRKEKAPQELRQAQQDMKTWTKQLDDLKRL
VPIEVNFNRITKEELPAAETSASQQEEKLVPARQKAEETNAQLNELKDKSRDLQSLRKAA
TEVTRLHREAEDVESEIGKLESELSATGSTATSEEIQEQLSQLGEQIRAVKAATEKVRAE
QQSTTNTLQTLSTSIHQREMDLSKKRQEVRDKETLEQRQNDAREEIAKLEKQSKELDKRL
SDAITPIRQKEGELATIRADFTRDEAAASRQLQVFNKSAEQLDSNKREIRSYESRGGDAE
LQKCERELKQHENVIGDMKTRIANLQAQVSQIDKMLADSQAVLRNLQDNLRLRSEKRSLE
SIDSQIDELDEDGARKAYRKFETDYNEQRRKQTEMQAEQARLGGEIQSMTNDRKEKEEEL
NTEYKDIDEKYRRELINLKTAEMANQDLEKLQKALDGAIMRFHGLKMREINETIADLWTK
TYQGTDIDKIMIKADSEGKTTGAARSYNYRVVMFKDQTEMDMRGRCSAGQKVLASIIIRL
ALAESFSVNCGIMALDEPTTNLDQDNIKALASSLAELIQERKGQSNFQLIVITHDENFLQ
EIGSSGVLDKYWRVSRGEGGQVSTIERQRLN