Protein Info for mRNA_2436 in Rhodosporidium toruloides IFO0880

Name: 10804
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 638 transmembrane" amino acids 127 to 145 (19 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 307 to 326 (20 residues), see Phobius details amino acids 393 to 416 (24 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details amino acids 460 to 481 (22 residues), see Phobius details amino acids 488 to 506 (19 residues), see Phobius details amino acids 526 to 547 (22 residues), see Phobius details amino acids 558 to 577 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 127 to 587 (461 residues), 314.2 bits, see alignment E=7.2e-98 PF07690: MFS_1" amino acids 139 to 504 (366 residues), 46.1 bits, see alignment E=3.5e-16 PF00083: Sugar_tr" amino acids 174 to 592 (419 residues), 304.2 bits, see alignment E=1.7e-94

Best Hits

KEGG orthology group: None (inferred from 63% identity to cnb:CNBB1750)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (638 amino acids)

>mRNA_2436 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSHPVDSAHPVEPSIARMTEEAAKQKAIGTSEKREFAGEDDFKHLDNLRENPNAVLENPL
QGISHERLEAMGRAFAREKGLDEYEEEFAKGAQLAQDPLAFESVAMLGDADREILRDEVA
HKWRHPWQLYSLVVCCSMAAAVQGMDESVTNGANLFWPLAMSLDTTAGPNNPDASYNEWI
LGLVNGAPYLCCAVLGCWLTAPLNNWLGRRGTIFLTAFISAAACIWSACTSTRWNLFAAR
FVLGLGIGPKSATVPVFAAETAPPLIRGALVMQWQVWTAFGIMLGTVSSLVFYHVGDTAH
IHGLNWRLMLGSALSPCFLVMAQVYFCPESPRWLIGRGRYRDAYHSLCRLRYSKLQAARD
LFMINALLEEEANMPSGKAALLELFAVGRNRRAALASGIVMFMQQFCGINVIAYYSSTIF
RQAGFDEITALGATLGFGALNWVMAAPAVWTIDTFGRRNLLLTTFPLMCIFLLMTGFAFY
IPETSKARIAVVALGIYLHCMAYSPGEGPVPFTYSAEAFPLYVRDIGMSYATAVTWLFNF
IVALTFPRLLTAFTPQGAFGWYAGWNALGTLLVLFFVPETKGLSLEELDQVFSVPTRKHA
SYHGKGVGYNFRKYILRQRLPPRAPLYSWQDHTIAREI