Protein Info for mRNA_2444 in Rhodosporidium toruloides IFO0880

Name: 10812
Annotation: KOG4505 Na+/H+ antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1172 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 65 to 85 (21 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 132 to 152 (21 residues), see Phobius details amino acids 160 to 183 (24 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details amino acids 306 to 322 (17 residues), see Phobius details amino acids 328 to 345 (18 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details amino acids 386 to 403 (18 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details amino acids 463 to 488 (26 residues), see Phobius details PF00999: Na_H_Exchanger" amino acids 71 to 487 (417 residues), 212.7 bits, see alignment E=4e-67

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1172 amino acids)

>mRNA_2444 KOG4505 Na+/H+ antiporter (Rhodosporidium toruloides IFO0880)
MSAPSPGSTTTAIAHFVLAHAGQLFARSEFEPAHGDPVNASLYTGAGEPEEATHELFSVV
TEVNIVHLAIVILTLFITFFGLFSGFVKERLYVGEAIIATCFGIAFSGYAAGIFAPRTWA
LGHHTDEITLELTRIIIALSVFAVGVELPKAYVWRHWKSLAMLLGPIMFAGWMVAGALMY
AIIPGLEFLPALVLAAGVTPTDPILASSVVGKGKYAQEHVPSHIRHVLQAESGCNDGAAF
PFLYLALFLLLRGEHSIGQAVGYWVLLVLLYQIILGVIIGSVIGVIARKILKFSKRRELI
DRESMVAMYVALSLLTTGLTTLAGSDDLLAAFCCGTAFAWDDWFTESIEESNFSSTIDLL
ANCAIFIYIGATMPFDAWDNEMTTLTWWRLLLLCVGILALRRLPSIYALQHWIPDIKTRR
EAVFAGHFGPMGVGAIFISTLAASKLPTPHIPPENSVERLSLMIVPVTYCIVLCSILVHG
LTISFFTLGRRVHSRVASFSRTLTAQSSFSGFGRTFSFGNNGGRNAREAEEPSWMSRVKR
ATRAEDIVINRDDDDEVPREKRDGSQSPESLAEKGEAGGVDDEEKRGMEEGEELERHAEE
EVKAEGKEPTPSEVEKEVEEEVEEDEGDLAMFGAPTKDKVGAGQKERIVKERHAKKVADS
RSQSRARTPADGPGDRDEDVCERGGTDVEKEVECADDVTRGRKRAEKHKREVREDEEREQ
DEHPCHNILGDDGEDESDSASAKERYAEKHRSGGGKGKERERREKPRNRSPSPLPKRSSR
LEARYCKGARTWQEGRKLIVDHGNGEVDVIDIDASPEEARKASKRADKEVVKIPDEAVEQ
EKRRLTKQHGPGEHDKNAVKRAAAKMMRQGSAILTRKEEGLTPEEKERRRREKLERDAWC
RKERKYRDSSPQRGEEEEWVEGDKMVTERGDEVFVRDLTPEEKRRKAKKHLAALRSLGHP
TEGLEAEIAKIARTLSHEREQQESPRKGEKGKKAAAPPSIERIDESPELSRPSTPEPSTT
QPRRHSPPPRSYSPEPMAQLSSGADPSSDKCDLSLFRTDRIEPESDEEEVGSAPAAASSS
PSPRPTPTRQHSSAMQAMREMLFRSRGRDASASPPPGSSGDDPVNRDQTASPSIRFAAVN
RPERDGNGGGRPLPVVGSSLSVRREPSKRAGE