Protein Info for mRNA_2488 in Rhodosporidium toruloides IFO0880

Name: 10856
Annotation: KOG1804 RNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 646 PF04851: ResIII" amino acids 478 to 626 (149 residues), 27.8 bits, see alignment E=5e-10 PF13086: AAA_11" amino acids 479 to 566 (88 residues), 47.1 bits, see alignment E=5.8e-16 PF13604: AAA_30" amino acids 479 to 632 (154 residues), 31.1 bits, see alignment E=4.1e-11 PF13245: AAA_19" amino acids 493 to 637 (145 residues), 38.4 bits, see alignment E=3.3e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (646 amino acids)

>mRNA_2488 KOG1804 RNA helicase (Rhodosporidium toruloides IFO0880)
MANPEFPCAPCRRIFRIKQAHDDHCKTPSHRQTLDTLRSGSAAVPTIPPGSLFCDACFTV
VKEKEWPRHVSSPRHSKAVRFQKYQDAKREAEGNKGGVEVSPEEVDFGLVEVEQLSEKSY
GAQKVQELTVKAGAEPCVIARGLFTTGKKSAGQARFTVQDFASRSVYIAPGQSRKIPVHF
LPRNVLGVHTDTLTLLILVIHDSQNFDKADIATYTPVQIQRTVRGEVASSADREALAPTA
PYIPKDERIFRAPRPDDSEVVRVPKGVAKEEFPENAPWAGKLPFYRPRPFLKETIENQPI
GIQIKQVRRMVGGGVLSQHNYGEFWETLLQAEQLQEDIDLRNHDVEGATMRKGNVGGVWF
LTVPGLIDRSPSVLKGDKIRIRISGQSNARWFEGFVSVVHGTDVGLRFHDSFKPTASDTF
DVQFTLSWVSIRRQIQALRAGLARSGLLFPKELHGDRSNKLASWQLLNPRWFSPSIERNP
EQRQAVLSIVYNTSGQAPFILYGPPGTGKTVTIVEACKHLVHYGHDSRLLLTAPSNAAAD
LLVERLSDLLKPDDMFRLNAPSRQTAEVSAKVKQYSRIKDGSTFMCPLLEELKSFKVIVS
TCTSASILAGVGLPKGHFSHIFVDEAGQATEPQSVLLLAGTGRAVD