Protein Info for mRNA_2495 in Rhodosporidium toruloides IFO0880

Name: 10863
Annotation: K03507 DPB11 DNA replication regulator DPB11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1209 PF00533: BRCT" amino acids 78 to 145 (68 residues), 26.8 bits, see alignment 8.4e-10 amino acids 795 to 869 (75 residues), 40.6 bits, see alignment 4.2e-14 PF12738: PTCB-BRCT" amino acids 83 to 144 (62 residues), 36.1 bits, see alignment 7.8e-13 amino acids 176 to 220 (45 residues), 24.1 bits, see alignment (E = 4.3e-09) PF16589: BRCT_2" amino acids 802 to 876 (75 residues), 32.1 bits, see alignment 1.9e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1209 amino acids)

>mRNA_2495 K03507 DPB11 DNA replication regulator DPB11 (Rhodosporidium toruloides IFO0880)
MPHPSQFKRPAGKKGPRQVTGKRQPKITLRPAPARDPAAPTADKGKRRTDAAQEEDEGVD
EDDQPRYGYRESLRGEAKPLEGLRISVSGCSGQKEGLWALAIEYGAERHGGLQEDTTHLI
ADGRDSAKYKVAIQRRIHVMKPSWLPAVKEAWTSGEDVDYLELELQHAMPILEGVKASLT
GFPQAGEYKNALKDLLQQHGAQVISGLNSSITHLIVASPTAPHSPTPSSDKLLHARKNRA
RLHPDLAVVWEGWAREAIEYGAIRPERLQEWAWNETGKEPEMKLDWQIAIAPPRSRSTRL
NPAASTSALPIPPPEFPQPKNDSAHPTRPSLVPSDVPGASKARSTFKGYDASLLEAVEAG
ASTSAALVTALPTARDPSNGTVLKKRRRAAPSAADAALDLSLPVANFAGDASQVLLQTYT
GGAGDASRFADADISELPTFDEMHASVSRQLGDGVAENQELAYQLVPGRVEMQLVPKSKS
VIRALSSRRAGSFVEAEKGGEEAKKKTRRAGARGSVPPIDEAAKDAAGIATGADDSAFFD
AAPQISPLRKEDRTPTASSEEGTIPPIFHGTKLALMELKGPNPKLIQGVIRSRGGKAVID
ASEDELATVDWIIVDHVEPPACFFASTDPRVVSICWLELCIFHDTLLAPADRLLERPLPY
HCPVEGARSLRVHFSGFGQEDDPAMHHIKRFMTVIGATFSVAFDRKSTHLVVCALDDDPA
LRPEDLDGLLNPKVAKAREWGTPICSLRDLRQRVLELAEEADEGKENRPDVAVKQDKGKM
REITNELEDRTMFGPLSDCVVFFSSKLDADRQSLATSVASLGGTVVRQQSDAVTHFVHAG
TKANEPYRDFKQAKANGSFIVHPRWIEECHNAHARVSEGDFPHTFDARKGGQLFDAGVSI
SASPPANEAQPALFARTTTPTRASSTVPAALRRSPSKSTTTPAGSPKASLLPAKRTTSAQ
QLEMEVEGEEDEYQAASSTPLQRRESDVATEVADAADLGGFEDQRGESPTRQVVEQPSTS
SPRSSAHRRDRLVEEDEQEPSSDPLAEIPPLRSESRPPVSATGDDPDAQKNVLKQQTSLL
LAQLTEAAPQAEKVGRTRSRTALTRKKSSSGTISLTTSKTATPANTDSASTSARRIPGLA
YPLDPSQATQDLESMHVVYDNPHEAAAREQIRQALAQRSGLEAADTQDVVQESPGPRTRR
SARTSAGRR