Protein Info for mRNA_2502 in Rhodosporidium toruloides IFO0880

Name: 10870
Annotation: BLAST expressed protein [Cryptococcus neoformans var. neofo...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 973 transmembrane" amino acids 328 to 343 (16 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (973 amino acids)

>mRNA_2502 BLAST expressed protein [Cryptococcus neoformans var. neofo... (Rhodosporidium toruloides IFO0880)
MLAALRHTRSPPLPREERAPPQPTSGRKPEGVTGCAGHAEDDDEDDDVESLLYLAQMDLI
AHKPEQATVKLQHAVDLGSSAACATLANLLARGWRAETARPALSSPPLVGPSPPATSPPA
SHPPPHAYRPRPPLRQSSSVAALSAPRRTAASQRAVGLFCTGLEVELRKPVRRDGADAKR
DEEDPVESGYGSGEDDDGAEGRFFSLERALDLVVGVTDAHRFGVLHAPHTQHIGQLPSPT
DPEGETNDLLWRRSSKVASELLAHEAVAPVLHAIPAQIEQRPSQRRRPSSAVSRSYTHPS
ATLIASPTSSSTDSQSASLFSPKRKLQLTIAIHALYTLAVQSYASSSSSFSSSPSCSLDA
ENHWSTIVSLAQPYSSLGGIGIKEADELVERAQRRLESLRHQDMGAQEPWRLAKRKGKGK
ERQVEEEGEGVLGTSAVTIRPASVRSNTTVGSFGGRTPRVGSAAAKFHFHGEVEEGDEEA
VSPAPTPIAAIPSGLPAADLAHSPPFALSPPKDSLVSPVHSNHSSAPSSNEEAALQYPSP
PDTPPTELPAQLQPFSPPQPEPTPGPSTTSSLSPPLSSASALAPLYPPDRSHSPSSSSAL
PRVTSTRSIRSTHSILSNLKHDPLQSYLDLRLKRVTSAASICTAPPDFSERSRRLGGKGK
GKGRMVEPEQVEGFALASNGRLRTRASSNAPAPEPKTWLSRFWSTTKNLKDRPAAAPTEE
GTSDLDRTRSSSAVHELRKALRRHEEASEVMYSYWGETEFVEDEEVDGADQREEQVVPAS
KVDSPAIPPQASTSGTTGAVESAQATRLRQSLAEAVDAAPRQRTVSSKRSFALNDPTASL
DPSPSRRSSHDRDRSSSRRRRHARQHSGSSATSTATTIDGFLAPPSPITRHRRRKSEPRP
LKPVAMDPLLLELEKRSRVGVQTVCAACGKRGLNFPACRKCKRTYCGRTCRIGQKHACSQ
SPPTTPEKAKGTA