Protein Info for mRNA_2526 in Rhodosporidium toruloides IFO0880

Name: 10894
Annotation: HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 597 transmembrane" amino acids 272 to 295 (24 residues), see Phobius details amino acids 299 to 317 (19 residues), see Phobius details amino acids 324 to 343 (20 residues), see Phobius details amino acids 349 to 373 (25 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 436 to 454 (19 residues), see Phobius details amino acids 466 to 484 (19 residues), see Phobius details amino acids 490 to 509 (20 residues), see Phobius details amino acids 516 to 540 (25 residues), see Phobius details amino acids 561 to 583 (23 residues), see Phobius details PF06738: ThrE" amino acids 165 to 405 (241 residues), 175.5 bits, see alignment E=1.2e-55 PF12821: ThrE_2" amino acids 462 to 577 (116 residues), 34 bits, see alignment E=3.1e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (597 amino acids)

>mRNA_2526 HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821 (Rhodosporidium toruloides IFO0880)
MLQERRGRRKKAVFSLHVETEDDKDGNGSGSGDLSPRPVLSIDTSALSPTHALPPSTRSP
ISPTASSATFRFLGAAKSPKSPTGSFSSLHREYFASGHLSPVLTPAEKERERAERRAKEE
AKERERDLREWQKEKRRRKKAREKELKARRVFITAHVAAIIERQEFILKLARAFMMFGAP
SHRLEAQLQATARVLELPHCACLYLPGCMLVNFGDPATFTSDIRFLKQASGLDIGKLKAT
YWIYHKVIRDKMSVGKGSTSLDDLMTSPPKYGLLHHVVVGGLAGAFIMPSAFYGSFIDCL
VAIPLGSLLVVVQVFLARNDMYSSLFEIVIACINAVIAGALSYTGHFCFYSVAAGSIVLI
LPGFIVLCAALELANRSIVSGAVRITYAALYSLFLGFGLSVGAEIYTMGGRESIAGGDDY
TCAYLREGAPWYRQTIPQWFYFLTVPGFLLCMALKNGQPLFRRDTLAMLLIGSAGFATNF
FSARAFSNMPALTSMLGSFVVGVSGNVWSKVTRESAFVVMIVGIFIQLPSGLANGGLLRF
ASDSATSNSNSFSTAVDSAAGLIRVAVGMTVGLFLAAALMNVLSRRGRSRGSQLSTF