Protein Info for mRNA_2528 in Rhodosporidium toruloides IFO0880

Name: 10896
Annotation: HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 PF07335: Glyco_hydro_75" amino acids 103 to 233 (131 residues), 121.5 bits, see alignment E=2.2e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>mRNA_2528 HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335 (Rhodosporidium toruloides IFO0880)
MPALVPSYPPLPPPHSPLPTSPSSLSRRASSTNPSLLFDVPASLSTFLSQLGTEGSLSCE
KGGGVGLDTRSGGYHTNGKGKSGTRYCGDKKEAPKMVWWQSNMDVDCDGSNKKGPCSNDG
SFQGQTAFQDKSGKDIDAHYVVIDQDKDFDPTKFGIEPLSVVAVVCGGKLTFGIWADTNA
QGDMGEVSVYLAQVCFGTGMNGDAGYDNPDVLYVAFPGEKSETVPSREGKDLNEIMTIGQ
GLVQKVFGGGGAVDSGGAGSLTGVSGASHSGGRAGSTGGGGGKLSDQATASSAGLSGGNL
GATGSGGATEAAPIPTGNSAATASSASEGAFGGLSTSGGTAGGSTPPGGSSSALLGSTGM
LGGNAAWPARQTIRAREQERRNKRQRVRWGVCAAVEAYESKKPE