Protein Info for mRNA_2588 in Rhodosporidium toruloides IFO0880

Name: 10956
Annotation: K03246 EIF3I translation initiation factor 3 subunit I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF00400: WD40" amino acids 6 to 37 (32 residues), 17.7 bits, see alignment (E = 1.1e-06) amino acids 43 to 80 (38 residues), 27.8 bits, see alignment 6.7e-10 amino acids 189 to 219 (31 residues), 24 bits, see alignment (E = 1.1e-08)

Best Hits

Predicted SEED Role

"Eukaryotic translation initiation factor 3 39 kDa subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>mRNA_2588 K03246 EIF3I translation initiation factor 3 subunit I (Rhodosporidium toruloides IFO0880)
MRPLMLSGHERSLTQIKFNAEGDLLFSCAKDSVVNVWHSHNGERLGTYDGHNGTVWTVDV
DTTSTLLVSGSADNSMKLWNVRTGECLYTWEFPTAVKRVAWSEDDSKVLAVTEKRMGYPG
GVSVFSINRDEPSNQSKDPLFVIKPTGSKATVAAWCGLDEYIVTAHEDGTLNLWDTEEGL
LFFDKEEKAHHGIITDLQMSPDGTYFITSSKDKTSKVWSIGPHKSSHGDEEYLTLIKTYA
GEPPLNSAAIVPGKPYVVMGGGQEAMSVTTTGARHGHFEVRFFHRIFEEEVARVKGGFGP
CNTVATHPQGKGYAIGGEDGYVRVFHFDKDFFTSRPYGSLEPEVD