Protein Info for mRNA_2594 in Rhodosporidium toruloides IFO0880

Name: 10962
Annotation: K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 823 PF03097: BRO1" amino acids 6 to 422 (417 residues), 300.7 bits, see alignment E=1.5e-93 PF13949: ALIX_LYPXL_bnd" amino acids 458 to 758 (301 residues), 242 bits, see alignment E=8.8e-76

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (823 amino acids)

>mRNA_2594 K12200 PDCD6IP, ALIX, RIM20 programmed cell death 6-interacting protein (Rhodosporidium toruloides IFO0880)
MSANNLLALPLKATNSVRLPSLADDIIAFVASASETTHPAAAEEDARALQALRETALGVG
EAAVPLVNLATLTDLTRYYAQLTFAKSRLPPSFPVRFPWYPLFSTPSALPLASGSFSTVS
PPIALPDLDYERLAVLYNLAAVHAALGTERRRTDQEGIKAAIASYQNAAGALSLLLDQLG
DLQRPSHAATSSVWPADLARPTIEALRDLCLAQAQEVAWQKAVMDRLKNGSVAKLALRVA
EFYQQAKQAADGARAGTDFTAPFLFPEDVSRYLAVKAAHFTAVAQYRRSIDDLGANRYGD
EHGRLQLADQQLKAAVALGKSGIPPPVLSDLKSLQKTVSENLARATKDNDLIYLATPTPS
SILPSIVSATLVKPVIPPELASPLTYLHSQGGGLGEPLLEALVPKETLETLSLWEDRKKT
WLDDKIVSTAQELDALSTACLTELQLPAALDAVQQPLGVPSAILTKAAAIKSEGGIARLE
AMMKDVRRVAEVNRKLLQEAEDLLAEESAEDAARRAEHGSRRWTLSPSSEIAAPLAQRAG
QLSSFLTTASQSDSTVRATFGEWQKVLEIFDAGQEAIARAIPSGDASNLSLAAPQVAAAR
DLRALLDELEGVQAARKRLVEAARTAVPQADVRGRLLLEHSASPASSGGLASFEPLLEAE
MKNLAEPYERELLASDARQQDILSNIKALHEAFVQHRQSQASMREREAALQRFDTAHVKY
FEMLTNLKEGLKFYADLSKLAGELRDSVKTFVHARRTEADNHEQALASQEAQAPQPITQH
RPVKKAAFKKSNQQRKDGAQRKAFASADEEMVLLKLLCNIAAL