Protein Info for mRNA_2614 in Rhodosporidium toruloides IFO0880

Name: 10982
Annotation: K18050 PRKCE novel protein kinase C epsilon type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1140 PF02185: HR1" amino acids 17 to 77 (61 residues), 40.4 bits, see alignment 6.7e-14 amino acids 174 to 234 (61 residues), 40.3 bits, see alignment 6.9e-14 PF00168: C2" amino acids 262 to 355 (94 residues), 26.5 bits, see alignment E=1.7e-09 PF00130: C1_1" amino acids 470 to 519 (50 residues), 42.9 bits, see alignment (E = 9.3e-15) amino acids 538 to 589 (52 residues), 34.2 bits, see alignment 4.6e-12 PF07714: Pkinase_Tyr" amino acids 901 to 1126 (226 residues), 117.3 bits, see alignment E=2e-37 PF00069: Pkinase" amino acids 901 to 1114 (214 residues), 197 bits, see alignment E=1e-61

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1140 amino acids)

>mRNA_2614 K18050 PRKCE novel protein kinase C epsilon type (Rhodosporidium toruloides IFO0880)
MSSQPPANPGGADYASKLASLHARIQKERKILEGFQAMRNATQNQDVIRTCDAKIREAQR
TIGWFEDSVRELEGRRAAATGGGRSSPAAMEDPRNRPLPSRPPPPPGAAPSYVQPQAYGA
NPAMHGRVEARDAASAGGPGGTALFGGAKAKEQFTNLDLIKADTPLTTAKISRMLHQLEF
KLHVERQYKEGIDKMAKLYMADGDRKARADTENKRVESKQKMVLLSQALKKYKTLDVMGE
LGEEDDGIAEDAKANLRRPLSGALQITIKSARDLAHAPQPKRSKHASETVIYVKVEDTPR
ARTHGSRNDRWNEDFEIHVDKANEAEVTIYDKVPGEGAPVPIGMLWLRLSDIVEELRRKK
MGAEAGPGWVTAARVTQGSGGSGSSAQMNDVPVGGLNREESLAGTFGVGGPGVKGEGIDA
WFAVEPEGAIQLHVNFVKSNVRKRPYDAGGLGRQGAVRKRKDSVHEQNGHKFVQKQFYTV
VLCALCGEFLLKGAGMQCEDCKYACHAKCYHKVVTKCISKSNTDADKDEEQINHRIPHRF
EPITNISPNWCCHCGLVLPLGRKHARKCSECGVTAHTDCIHLVPDFCGMSMEMANKLLSD
IKTINSSRRAGATKLTPATRPIPSERIQTIPQPPQTPTSAYGQRPPVPAYDSRVQQQLPA
EVGRLSLSNDQQQQSASRIPPPTLDSYPQRQQQQPLPEQQQPPITAPPRHSSASTVSSFG
NDARDSIGSLLGGYTSDAGRPAQQQQPSQPQPPSFQPYKQPQQQSYGAPPPAQIQPHPSS
ATVPQKPQAPFPQQQPQPPQQPQQPYPPRFQQPAPPPSTQPGQLYQQPAAARVPPPAQQQ
PSTYGGQAYPQAPQQQPQQVVRPPAQQAVAPVAVPPPVKQQQVAPPQPARQRRIGLEDFN
FLAVLGKGNFGKVMLAEEKRSAQLYAIKVLKKEFIIENDEVESTKSEKRVFLAAARERHP
FLLGLHSCFQSETRIYFVMEYVSGGDLMLHIQREQFTPRRAKFYAAEVLLALEYFHKNGI
VYRDLKLDNILLTLDGHIKIADYGLCKEDMWFGKTTSTFCGTPEFMAPEIILEQRYGRAV
DWWAFGVLIYEMLLGQSPFRGDDEDEIFDAILEDEPLYPIHMPKDSVSILTRVCSLPLAT