Protein Info for mRNA_2628 in Rhodosporidium toruloides IFO0880

Name: 10996
Annotation: K09468 MSN2_4 zinc finger protein MSN2/4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 PF00096: zf-C2H2" amino acids 13 to 36 (24 residues), 24.9 bits, see alignment (E = 1e-09) amino acids 42 to 63 (22 residues), 18.3 bits, see alignment (E = 1.2e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (635 amino acids)

>mRNA_2628 K09468 MSN2_4 zinc finger protein MSN2/4 (Rhodosporidium toruloides IFO0880)
MPAARGSASGQTFPCPDCDKTFSRKEYMARHYRSKHSKEKPFQCEFCDHAFSRSDLLRRH
YKTCAEAKARRGETGAGASPPTRRNSAAAGSAASAAALAAPPEPPRTTYEMPYASSSASA
AMPHPSNNPLLPTPPPSYYAHMQMPMPEHPIYGLPPATNMHSSFSIASGSGTAPSPENGP
SPFSTFSNSSNLTLSSNSPQTPFTTDASLPPAPSYPHLGMMQPPPPHPSASSAVPSAPSA
IPSTSSHPHSSTTTPTTPSTSAFKSGSLSHDTLAPGLSRTGSFTRDEVLASEVLRDLMRS
PLGMSGGGTPPVSTAAAGGMAWHPTTSGQSQSGAAQSRAEGAGGASMGGDAHDWALSSVF
GTTTATAGGAANGVLVSAPYAGPAVTPHNKLEETPAAQALAEYFNKGGVGGITALDLGFP
TEPCLFPDWMFKAPTVHEDEKRFWMPEQKFCLGYLYPWHVPPLPVLSGYAKKATERLLPA
MPIVHAPSVVLNEMEVHTAFALTVAGGAYERDGQSFSNEMLVEKRVFLVRGFQEKNKTWD
QKFASLQSMLLYQLLGLFHRDEQQRLLSHSFHSALVYMLRALDLPTKVRETIVLLPGEDM
QGEELEKAWRDWVKVETWRRCLRIDSSRVDLLALT