Protein Info for mRNA_2635 in Rhodosporidium toruloides IFO0880

Name: 11003
Annotation: KOG2615 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 123 to 148 (26 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details amino acids 333 to 351 (19 residues), see Phobius details amino acids 366 to 388 (23 residues), see Phobius details amino acids 399 to 421 (23 residues), see Phobius details amino acids 466 to 491 (26 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 431 (413 residues), 108.4 bits, see alignment E=3.9e-35 PF00083: Sugar_tr" amino acids 76 to 226 (151 residues), 31.9 bits, see alignment E=7.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (508 amino acids)

>mRNA_2635 KOG2615 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MPTTQGSPEAARRVVRVVILALILDLLSFTMPLPLFPRIIEDFVRQEAGQAHSAPTLLSR
TLAFVRTLRAYLLPSSSSSTRSSASRWDLTLLGGLLASLFSFCQFLISPQLGKLSDRFGR
RRVLLATMVGNVLSALLWLFAGNFAIYAASRVVGGLSEGNVQLSIAAISDVTTPETRARS
LALVGAAFSLAFTFGPSLGAYLSTRTFGKASIVHLPPRLASALSFLPPTIQLNSYAVPAA
MTVVLLSLETLYLYLCLPETRGWKITTMPASSPVEAKSTRPSARPTRSLAARQARLRSLS
RLHLLFLFFFSGAEFTLTFLTHNLFDWSNAQNGRLLGFIGILSALLQGGYVRRKAKGASA
EQTARMAMSGMQACTGSLVALALLPLVAKAKGESALAKALLWSAAAGLAFVSATVVNSLN
ALASLETDEHDTVTKLEDRIDKGHALGSFRSAGQLGRAVGPLATTAIYWTVSPTAAYAVC
AVGVALVVRGMRGIVRDEWRRSITFKEE