Protein Info for mRNA_2637 in Rhodosporidium toruloides IFO0880

Name: 11005
Annotation: HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 35 to 54 (20 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 119 to 136 (18 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 316 to 339 (24 residues), see Phobius details amino acids 351 to 370 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>mRNA_2637 HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241 (Rhodosporidium toruloides IFO0880)
MPFTPAPALVGGLLLSFSTSSLALSHGRILGCSGIAHSSIAHFLSLLGIPHTRSSAPPKK
DDRKDIPPSTSASAPWWKLASLAGFVAGGALLAVLRPSIERLVGAALFDPPATIAQQGGL
ARVILAGLLVGAGTKLANGCTSGHMLLGLPRFSRRSLAAVLTFFSFALLTSRLAPHPLAA
SFALPVPLAPATSSSFSPAQTLALLALPPLASLATASSDSLHSFFLSLTFTIGLSLAGML
RPSKVLSFFYLPLPLPFSSLKAPGEWDPSLAFVALGGLLPNALVYHNWTKKEPRPLVKGK
DWTFPRDAKAGAIDTRLVIGSALFGTGWGLLGLCPGPLLSLLGTGPSISGWAPWVFGGAF
AVGGVAGGWVGL