Protein Info for mRNA_2654 in Rhodosporidium toruloides IFO0880

Name: 11022
Annotation: K00864 glpK, GK glycerol kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 588 transmembrane" amino acids 519 to 538 (20 residues), see Phobius details TIGR01311: glycerol kinase" amino acids 42 to 581 (540 residues), 628.2 bits, see alignment E=3.8e-193 PF00370: FGGY_N" amino acids 43 to 307 (265 residues), 200.6 bits, see alignment E=3.3e-63 PF02782: FGGY_C" amino acids 317 to 529 (213 residues), 201.4 bits, see alignment E=1.3e-63

Best Hits

Predicted SEED Role

"Glycerol kinase (EC 2.7.1.30)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization or Glycerolipid and Glycerophospholipid Metabolism in Bacteria or MLST (EC 2.7.1.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (588 amino acids)

>mRNA_2654 K00864 glpK, GK glycerol kinase (Rhodosporidium toruloides IFO0880)
MQRQRSLIAEARAQRPAGLGQIGHRPSSAPDREAVADQETEFIGAIDCGTTSCRFYIFDQ
WADVVAHHQIEFEQLHPEPGWHEHDPSIYCAEIDKCIEACLEQFEGKGHSKDQLKGVGIA
TQRETTLLWDRQTGEPLYNAVAWPDARNASNIRDIRARAESTKFDTPDGVIVGEEGIRRL
TGLPLSTYFSATKWDWLKENVEEVKEARKRGTLMAGTVDTWLVYQFTGGKDGGIHITDAS
NACRTLLFNLHKQSWCTQLCEFFDFPPEALPEVVSNSEVYGVFRKGHLLEGVPIAGLIGD
QQAALVGNKCLTKGDAKQTYGTGCFMLYNTGTDIVKSTHGLVTTVAYKMGKEGPLHYALE
GSIAVGGSSVTWLRDNLGIIDHPREAGELADEVPDTGGVYFVTGFGGLFAPYWDIRATGM
LIGLSTFTTKHHIVRATLEATCFQTRAILDAMSKDTALATSSSSAPNGTSVEKKGEEKGP
AGLKVLQVDGGMTGSDVTMQLQADILGIDVRRPTMRESTVLGAALLAGGALGLFGWDLSR
PETLQKVNRLKVSTFSPRITEEEKEWKYAGWVRAVDRARGWKTNSGHG