Protein Info for mRNA_2679 in Rhodosporidium toruloides IFO0880

Name: 11047
Annotation: K14262 DUG2 di- and tripeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1007 PF00400: WD40" amino acids 166 to 199 (34 residues), 21.1 bits, see alignment (E = 9.2e-08) amino acids 520 to 554 (35 residues), 12.9 bits, see alignment (E = 3.6e-05) PF01546: Peptidase_M20" amino acids 629 to 996 (368 residues), 91.1 bits, see alignment E=1.7e-29 PF07687: M20_dimer" amino acids 741 to 896 (156 residues), 37.4 bits, see alignment E=4.3e-13

Best Hits

Predicted SEED Role

"Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1007 amino acids)

>mRNA_2679 K14262 DUG2 di- and tripeptidase (Rhodosporidium toruloides IFO0880)
MDPLKPPHEHIKQIANHPAAVPVDSASPHLDFSRPNQSLPPASALSATRPVDLTTPPSCH
GEPRTVLASPALPASASSPTESSQSSTPAPVLLSTLSASDGESILCIAVEAGEVDAGSGT
PAKGEEGKDGNRSRARKNGREGRVYGGSQGGDIHVWDLETLSLRARLTGHEGAVLALQVV
PAFGWLISASGDGTVRVWDTRTLSLLYLIHPPHDNIGDILSIAWVPSELLDEDEHAGHRR
GREVPGTSGRRRGTGRLYAGCQDTSIQWIDLPPTPHPSTANDSSASHPSPVQSPHHPHSH
ASSHSYFSSSPLSHSPPIYKAPNKFFDSISQADKNRARALGSRRGSGDSLNTLGKSLKDS
RPATPNESGAGQANGAGQAVELQFQAECITPFAHFGYVYCLLVGKSNDRSVLMSGSGDES
VKLWRPTTSDLLPIATLSSTGEDCDAVLALATKDNTLFAGHQGGVVRVWDLDTLTCVRVL
RPHEHDVLALSVLSSSLYASCANGWIKQWDLRTFKLENAWEGHKSIVLSSEVCRTGRGGW
LLTGGNDASLKVWDLRSEDTKDSTIADDAHREDCRQGALYLKRALRGLGAETVILPGAPE
KNPIVLSTFRANAPPRPNRFEAPRRKRVLFYGHYDVVPASAPDVWTNDPFTMAGKDGWLY
GRGVSDNKGPVLAVAAAAAELRRRQEMEVDLVMLMEGEEETGSAGFQEAVRKNRGLIGNV
DVILVSNSYWLGEDVPCLTFGLRGVIHASVKVESAISKPIHSGIEGGATSEPLNDLIRVI
AGLTDADGRVRIPGFLDDVRKMSPNEQKLYEKIVERYKNLNESAKLASHSAFSDPLKALI
NRWRQPALSVHNVEVPGPAQKSLIPNSASAAISIRIVPDQSLDDIVAKLKSHLEKSFRSL
RTQNKLSVEINHVADWWLGDLDSPFVSAMADCISSQWKLDPLFIREGGSIPSLPFLEREF
AADAIHFPMGTSTDSAHLPDERIRVLNLENGKAIVSAWFSKIASFNL