Protein Info for mRNA_2683 in Rhodosporidium toruloides IFO0880

Name: 11051
Annotation: K07300 chaA, CAX Ca2+-H+ antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1513 transmembrane" amino acids 548 to 571 (24 residues), see Phobius details amino acids 770 to 790 (21 residues), see Phobius details amino acids 794 to 811 (18 residues), see Phobius details amino acids 913 to 935 (23 residues), see Phobius details amino acids 955 to 977 (23 residues), see Phobius details amino acids 985 to 1007 (23 residues), see Phobius details amino acids 1019 to 1041 (23 residues), see Phobius details amino acids 1053 to 1073 (21 residues), see Phobius details amino acids 1122 to 1142 (21 residues), see Phobius details amino acids 1319 to 1340 (22 residues), see Phobius details amino acids 1354 to 1376 (23 residues), see Phobius details amino acids 1388 to 1410 (23 residues), see Phobius details amino acids 1423 to 1444 (22 residues), see Phobius details amino acids 1451 to 1470 (20 residues), see Phobius details amino acids 1482 to 1501 (20 residues), see Phobius details PF03733: YccF" amino acids 546 to 596 (51 residues), 57.5 bits, see alignment (E = 1.8e-19) PF01699: Na_Ca_ex" amino acids 955 to 1140 (186 residues), 30.5 bits, see alignment E=3.5e-11 amino acids 1318 to 1464 (147 residues), 54 bits, see alignment E=1.9e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1513 amino acids)

>mRNA_2683 K07300 chaA, CAX Ca2+-H+ antiporter (Rhodosporidium toruloides IFO0880)
MDVPPRPSSSAGDSSSESTNSSDTIAAPSTAAPIATSRSEDIDLPIPEPAVHDELATTPT
PQTSQLARTPPAFKPAPSYAAIAAKSPQAPAHTQTPPPRPRTHSNTTAASSSFSSPARRD
LSASDAIVHEEEPSAYGTAGEEMHDEEEDRFFTPMQGGATGARRPSASVTGARSRPPTSA
VPSTSNARRSISVNTSVSNASSVPAAAPPARQSLYHPQSSARLSVVPSVPTSASHSRSRQ
PASGSANPRRSVSRTGQHSAASSSRGGSSGSDADSDDGERRRRTKRGVQSAAGSDDDEVV
TRDRGEELVRKRWKERKEARKVALAQRMKEESQRRISAYTNMSSQAGDVSDSLGLGYPSN
PNTPGPHGREMSLARSEAFSDLAGPRSPAFSSAAPPWSPLGLPPHHQHHHAYPHVPRPSL
GQRGTSFVSSASASSQVGGGSDTEGPARSIVEADEEDGIDGDEPRMEDWRDGGADGEHDA
GNDTDDEGEVEYTLKDRQDAINVEHPFGLPIWKPALYKKSRSIARHADAALHAAPSSTAL
HHLLPSNVIWTLSFGVWLFILCGVVSAVLFITPFGGAKYGRVVWELGTYLFWPFGKYVEG
WVEELDDGTKSDDAAPDGVQGVRSGDMSDEEDNAERFGRRGRSGTIGQGGTISSTVSSPR
RPPIRAATFDVLPDEPLRRSDRTVRPRPSESSLRVPDEHSSLLDRTPQQNRTYGSLGHGH
HDRGDKAHRSSSEETITGDTMPRIRSVAPHDFSKDGDSTHGFRLRALGRIMYWVAFYLVI
APVLALVALACWGGVFSIPMAKLLWVLLRHLNNEPLSLYFRSPPDYQPVVQDLATDVEAP
DVHADDPTHQQQDATSVVYPLRAGQPAPPQPRQSLVADRRKGRLRGPHPTVLLCTYRAAG
LEYYKYTVDGVNVWFVNLLALVFLAIIDFFLVAPYVERHYPTGEGGVLRLISSQAFVFVT
ALLSVIPLSYFIGMAVASISAQSSIGVGAVINASFGSVIEIVLYSIALTQAKGELVEGSI
VGSILAGVLLMPGMSMVGGAAKRKEQRFNARSAGVTSTMLIMAVIGTLTPTLFYEIYGSF
QLTCTDCDPLSRKAGAASCKTCYYEHVSPADDPFYRTTVVQLSYYCAIILVLSYLIGLWF
SLKTHASQIWQNAQPTHEHGASRPLSGAQHASLADRRSIYQRLVPANLIQQVKRRPSAMG
KSPLQTPLLAPAPLDLPPQTPGLKPDGSAPQSAHRPEHAQQHFETVQLPHGLTADEFSRA
FEIVASAAPALRPHAGGAPLHRASSHVREVSAPQHGKEEEAGGHGGHDAPNWSRTKSATV
LLACTVLYAIIAEILVDVVDVVLDGFAIPEKLLGITLFALVPNTTEFMNAISFALNGNIA
LSMEIGSAYALQVCLIQIPAMLAFTAWYGIGKETMAHRAFTLVFPRWDAIAIIFSIFLLT
YVYIEARSTYFRGSLLCFAYLTLLGGFVWAPSGRDTSDNPSLAPHTLVASAVLPCTLTFA
GKAKALFLSLFTH