Protein Info for mRNA_2693 in Rhodosporidium toruloides IFO0880

Name: 11061
Annotation: K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 189 to 212 (24 residues), see Phobius details amino acids 391 to 409 (19 residues), see Phobius details amino acids 415 to 434 (20 residues), see Phobius details PF13716: CRAL_TRIO_2" amino acids 121 to 235 (115 residues), 41 bits, see alignment E=2.2e-14 PF00620: RhoGAP" amino acids 288 to 430 (143 residues), 85 bits, see alignment E=5.1e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>mRNA_2693 K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1 (Rhodosporidium toruloides IFO0880)
MSANGWGGTLSAMFGGGGNGRGGASGERGGGRGAATVAGPGGLQQKQKADVRRRLPDWSA
GDAGVEVGQPKEEDSLEDGEGTQDPGNPQLEGDQLDRLAAAILWQAGTTTDTSPHPLLAV
AASRIPPPSEVSHPDLLTRLRLRLEQFAERGRYSVVLFVNPAPNSPSTAHLVAAYLALSR
TARKNVQHVYVVGGGWWSSILVTLFSATLLSVKTITSRGKLVQCPSLSSLAESIGGKAFA
QIDVPLEVYVANAAVDKAIKLPEKDDQLPRTFGVPLEELAGKDGKPLPRLVRDCLAVLAA
EGPASVGIFRRSPSASTVSHLAAAYDRGHPVALSSAPNAPYIAASLLKKFIHDLPDPLIP
RDSWDAIKACPLDDDLAVPYLRFNFLPLLPPTSLHLLSRLVSVLAGIAANHSHNLMTSSN
LVICLCPALMGGLGASRDELEMCRVPGMEVGSMRGLETIKRRERAGNTLGGVLKVLIDRS
AERAR