Protein Info for mRNA_2733 in Rhodosporidium toruloides IFO0880

Name: 11101
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 272 to 293 (22 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 340 to 359 (20 residues), see Phobius details amino acids 365 to 390 (26 residues), see Phobius details amino acids 406 to 428 (23 residues), see Phobius details amino acids 434 to 454 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 26 to 466 (441 residues), 303.9 bits, see alignment E=2.2e-94 TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 26 to 465 (440 residues), 283.2 bits, see alignment E=1.9e-88 PF07690: MFS_1" amino acids 59 to 219 (161 residues), 59.8 bits, see alignment E=2.3e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (491 amino acids)

>mRNA_2733 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MMLKPFTHPWGEGLEGTPLKIISMIGACAGFLTFGYDQGIANALTQNPDFFKTMPRLAED
TTVLGTVLALFVLGAMFGCLTMSALGNKYGRRPLILFATITTLVGAGGMAGANGLACFCV
MRLLNGYGVGILTSIVPTYVGEISKPRIRGMMMSLELVAAATGLAVSFWVAWAFRHEKGP
LGWRLSIAIQAFILLFTLVTMLFAPESPRWLMEAGRVEEGRRVLARLHGQAFADAATLEI
QDAIAVEHAAQRGKGYAECFANNDQCFRYRTFLAIGVNAAQQLTGINMATYYSANILINS
VGMTPDKAVFVLGFLGVAGWVFMLGGAFVLMDGVGRVRTMIIGAAGCCVGQILLAAGVAH
QESKAAGYVATAGLFLFLCIFSATHLPTAFVYSSEIVPLAIRTRSATLGVAVQYILNFVV
VMVVPTAIPGMGGWGFYALFAGVNGLMVPVLYFFCPEVSGLSLEDVGGIGELEANKVEGS
FDHVEKVESGY