Protein Info for mRNA_2743 in Rhodosporidium toruloides IFO0880

Name: 11111
Annotation: KOG4491 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 36 to 57 (22 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 205 to 228 (24 residues), see Phobius details amino acids 240 to 264 (25 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details PF01940: DUF92" amino acids 10 to 316 (307 residues), 225 bits, see alignment E=4.8e-71

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (327 amino acids)

>mRNA_2743 KOG4491 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MHVHPLSLALAILVAYRGTRSGSLNTSGGLAAATLGYAALANPLSVFGVCLLGFYLAGSR
ATKVKAAIKATYEAPEDAAPSTSSSTPSKAKTGGNRNAVQVACNALIGTLCAASWRYLYG
GELGGRSWEGEGRWCVVASEEEGGERVSRALMLAAVAFWASCCGDTFASEVGLALRFLGI
LSSRPPILLTTLRPCPRGTNGGVSAWGTLVSLLGGVLVGLLAVVSLVVQGQAKTCGIGRL
VEVVGVAALSGFGGSMLDSLLGALLQPTYYSQTRSLVVHSPHPSPAHPKEQIVRVPGSGW
DVLSNNQVNFLSTAVVAGVVGWWASRG