Protein Info for mRNA_2750 in Rhodosporidium toruloides IFO0880

Name: 11118
Annotation: K14962 WDR82, SWD2, CPS35 COMPASS component SWD2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 PF00400: WD40" amino acids 123 to 159 (37 residues), 27.1 bits, see alignment 5.7e-10 amino acids 300 to 322 (23 residues), 21 bits, see alignment (E = 5e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (402 amino acids)

>mRNA_2750 K14962 WDR82, SWD2, CPS35 COMPASS component SWD2 (Rhodosporidium toruloides IFO0880)
METGPTASTSTATSPTSLPSSVVLTPPVMKSWKLSKVFKSHNEQGKSYTSLSFDDRGEML
ITSGEDETMQLFDVRTGKHKKQLYSKKYGVHLARFTHKSSTVIYASTKGNDDIRYLSLHD
NNYLRYFKGHKKPVTALQMSPVDDTFLSGATDDTVRLWDLRAPSAQGLLNVAGHPCVAYD
PSGTVFAVVLNLRSTVMLYDLSQFDKQPFLCVHIDDPVLRKRTYPPRTPIYTSVSFSNDG
KWLLVGTSGDVHYVLDSFEGTVVARLECPPEQIATGLERAITAPYDRPMEPAAGISSEEV
RWTPDGRYVVSGSVDGRLHVWDVAPPEADLAKLYPSRPSPGPECTLHPMTSYEGHLGGPS
RALAFNPRQAMMASAGFELAFWLPSLQEAGLVKKSEDAAMQA