Protein Info for mRNA_2767 in Rhodosporidium toruloides IFO0880

Name: 11135
Annotation: K10084 EDEM1 ER degradation enhancer, mannosidase alpha-like 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1006 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF01532: Glyco_hydro_47" amino acids 51 to 500 (450 residues), 353.6 bits, see alignment E=9.4e-110

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1006 amino acids)

>mRNA_2767 K10084 EDEM1 ER degradation enhancer, mannosidase alpha-like 1 (Rhodosporidium toruloides IFO0880)
MHGNSNRASLTASRLVVSLLVLFSFCRGVNGAFYSSQRKAELREMAAETWRHAYNSYKRV
AFPADELLPLSCGKQGHDRSNPNNGAVNDVMGDYALTLVDSLDTFAMLNDKAGFEQAIRE
TIEHVSFDVDSRVQVFEVTIRMMGGLLSGHLLAMPGAYNRSDPSTFHSSIRGFSLPWYRS
ELLHLAHDLGRRLLPAFETPTGIPFARVHLQRGLRGKGGKGESGETCSAGAGSLLLEFIT
LSRLTSDPTFETLARRAFFAIWDRRSDIGLIGNTIDARSGVWMHGAAGTGAGIDSFYEYA
AKAYVLTGDDDYLRVWQDGYAGLQRYVRTGDGFWYRGANMQTGQLTSVLVDSLAAFMPGV
QTLMGDLDSATRSHAPYAFLWLRYGGLPELYDTHRRQAVQLGYPLRPEYIESNMYLYQAT
KDDWYLELAEQVLHDINNKTRVDCGLAAIFNIDTGKLEDKMPSFVTSETLKYLYLTFDED
SPFLRDDSAFVFTTEGHPLEIPLPPPDSPCRSPEPAPANSTSTPTSALTCAAHEPVYDQR
HAHFLSLSMNQRVDWEHARWLTGYQPQDEQHEVDEGRWSRNGWCEMPLGEDPVVASARFV
DPLQTIRALVLNYLRSAPSVTSNILPGLTPSAPSVSLTPSAHAVPHSDQSIELLFAPSTS
HEILHPRSSQLTPHPTGSGDIIVHSINGLRFTLVRASTSGSAGYVAVLAGLPQKKPDRIK
VVARVGEGEGPPSGMGVGAGDVEEKQGKLDAIWDKLVHPLGGSSATSECSDVDADSPDTA
SPTLHIPALAASFGPSIVHRPSSAIPSGLTPFMLDGPALPLVLPSFDIYGCSALHPPPSS
SPSLLLLHRGHCSFALKSHNAALSSFAGVILISSPSATDEEGEEGEGFVVPSADEGEEEE
ETMSSLVPLVLVGNSTGSVLEGLVRSVEVAGEGGEGGGLVVQVGEQDGEASTMMPRRQVW
VSITHADEDEEEEESAAGLMLGGYLVRNIKLHRTSRRAAAAGGSVP