Protein Info for mRNA_2774 in Rhodosporidium toruloides IFO0880

Name: 11142
Annotation: K02991 RP-S6e, RPS6 small subunit ribosomal protein S6e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 PF01092: Ribosomal_S6e" amino acids 1 to 126 (126 residues), 192.6 bits, see alignment E=1.1e-61

Best Hits

Swiss-Prot: 69% identical to RS6B_SCHPO: 40S ribosomal protein S6-B (rps602) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02991, small subunit ribosomal protein S6e (inferred from 75% identity to scm:SCHCODRAFT_79114)

Predicted SEED Role

"SSU ribosomal protein S6e" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>mRNA_2774 K02991 RP-S6e, RPS6 small subunit ribosomal protein S6e (Rhodosporidium toruloides IFO0880)
MKLCFANPATGQQKTIEIDDERKTRIFYEKRMAQEVAADALGDEFKGYVVRITGGNDKQG
FPLKQGVLVPHRVRLLLAKGHSCYRPRRTGERKRKSVRGCIVGSDVRALHLVVVKQGEND
IPGLTDEVLPKRLGPKRATKIRRFFNLDKSDDVRKFVIRREVVPKKEGAKPYTKAPKIQR
LVTPERLQRRRHLRSLKRRKTEQQREQIEEYKAVVAKRLAERKSSVKAVKAKKAAARA