Protein Info for mRNA_2784 in Rhodosporidium toruloides IFO0880

Name: 11152
Annotation: K20241 WDR44, RAB11BP WD repeat-containing protein 44

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 987 PF00400: WD40" amino acids 486 to 512 (27 residues), 24 bits, see alignment (E = 5.5e-09) amino acids 595 to 630 (36 residues), 28.9 bits, see alignment (E = 1.5e-10) amino acids 637 to 673 (37 residues), 19.5 bits, see alignment (E = 1.4e-07) amino acids 778 to 811 (34 residues), 23.7 bits, see alignment (E = 6.8e-09)

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (987 amino acids)

>mRNA_2784 K20241 WDR44, RAB11BP WD repeat-containing protein 44 (Rhodosporidium toruloides IFO0880)
MLRRAHTAPVPSSTLPTSRRPFIEPFPYFDTTLDELVSCFLPPKPHPRSRHARSSSASSA
ARLRTQMSLPPTPPPTNPPSPATAFASPRLTALARSSSLPARPATDGPSVVSDKNPVVPS
PASASPSGAAPASPARPAFAPLARTPSSAFVAASKEGLVHPLTMHAIARRDSEQEAIRVV
RAREATERRRESSVESDSSAPGGAGGKMPALLRKQSWTARASSGLARSESPTQMSDEDGT
GSGSSARQGSLRRKKDLSGSALGLGLVHEGAEDETGRQASGATITPSTAGPSAATGGPAS
TSSAGASGTSTPNRSSFTHNRSVSTASSRADPPPPLSAASIKAPKKSFLSRFGRNRTASS
SSAPPREMRESTPPMSASSASGAFSPASVDRETLDSPTMELTPTKAEKGAAKGEKIQFAK
VKTKGKPTKAFGKLFLAQELVFPSATSSFSRPSAAAGDDDSLHSRDETASQRSGNDDGAK
GTKKKNAIWTIKFSEDGKYLATGGVDGVVRVWEVLSTPEAREAALNSHTTTTADSSASTP
GAPDSLTIARTAGAPATPTSTTAAPGLRGKKSKSNLALSQPPKTPVCVLPVFAPKPIREF
KGHDADVLDLSWSKNNFLLSSSMDKTVRLWHISRDECLCAFQHLDFVTSIAFHPRDDRFF
LSGSLDCKLRLWNIPEKRVHIWTEVPDLITSVAFTRDGQRAIAGTFGGSCMFFDVGTLHY
HTHFTAKSTRGKNARGKKVTCLCPFPLPSSGGERLLVTTNDSRIRLYHTADKMIEAKYAG
HENMSSQIRASFSDDGRWIISGSEDRNVYIWESGMAPHENEGFRLSKKRKDGAGVEFFPM
SAHIVTAAIFAPTMTRSHLAAAHDPIFDDGHSHFAPLDRTLSGASLGLAGVTSRATTIES
TLAAGGLAEGEVLVPATSREGQVVPGAGGAEDAIIVVADAETSTISVFRNSSIPVNALAS
TLAAPTSSSKLSRGGSKRWSLYSDGAR