Protein Info for mRNA_2864 in Rhodosporidium toruloides IFO0880

Name: 11232
Annotation: KOG2699 Predicted ubiquitin regulatory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 PF00789: UBX" amino acids 145 to 224 (80 residues), 40.1 bits, see alignment E=1.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>mRNA_2864 KOG2699 Predicted ubiquitin regulatory protein (Rhodosporidium toruloides IFO0880)
MAEETPQQPILMTSRLPGDAHSSPSPSPSPEPVAGPSTATATVQPPAGPARTVILTSVSP
VDPSKRRDFEARFYLPSSSTYATATTRFLDLPESYFQPTQVELQQAFAGQVKKREDMTDK
PLMTKALREREEAAKNKAKAARWPHTRIRIRFPDRSQLEGVFPSTDKLVHLYEFVRLALR
EDVRDIPFVLYQTPPRTEYRRGDPAYKGKNLMDLQFTPSTALYIKFEAPSPNSTASALPS
DISIDDLNSTTSSPPPLTPDLLAAGGELPLPPSFLPGDESPSGAPSGESEEARKKREKEE
KMKRLLGKGLGMGGSKGSVKPSWLKIGKDAHK