Protein Info for mRNA_2874 in Rhodosporidium toruloides IFO0880

Name: 11242
Annotation: K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 PF02005: TRM" amino acids 72 to 228 (157 residues), 85.4 bits, see alignment E=2.4e-28 amino acids 267 to 571 (305 residues), 298.7 bits, see alignment E=3.6e-93

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>mRNA_2874 K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase (Rhodosporidium toruloides IFO0880)
MSTSSAAPVEAQKDSVMQVEETAPVQADAGAQKGEGGEATTTAPGVIPEGFIVHTESSTS
ILFAAPPSTSTSGPAPVFLNPVQEYNRDLSVVAIRTWGEVRQREKRERWEEGLRKKWAKK
RARDAKGDGEKGAKKRKAESGEKEAVVEAKEGEAEKTSESAAPAEPQEEKLPPPPTYKFT
LLEALSATGLRAIRYAKELPLLRYVVANDLSASAVADIRRNIAFNGLSPAGHSSLPSVPL
SIPLSSLKPGPPYGLSKSDIDEALYGKVRVNEGDACVFMYQHRDEEKRFDCVDLDPYGSA
VPFLDAAVNATADGGLMCITCTDMGVLAGHNYPEKSYTHYGGVCINAEYSHEVALRLVLN
ALSSTASRYGRYIEPQLSLSIDFYVRLFVRVRTGPKEVKAVPSKTALVYYCHSCQTPHFQ
HLGRVTEKVNPKNGQSNAMYHVPSGPPEEIEKGGRCGECGGKMHIAGPMWAAPIHNRDFV
KEMLEHVESNSGDFKTSDRIKGMLRVALAEVEAPLYFSPAKIASYFHAICPPITTFASAL
LNAGYTVSRSHAMAGSIKTNAPRSFVHDIVREWIKEHPVAMKNVKEGSPAKVLLAKEQRH
TVSLTPHPNVSSALLDNVKLVRYQMNPQENWGPAKAAVRGAPQK