Protein Info for mRNA_2875 in Rhodosporidium toruloides IFO0880

Name: 11243
Annotation: HMMPfam-NMT1/THI5 like-PF09084,SUPERFAMILY--SSF53850

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF09084: NMT1" amino acids 98 to 231 (134 residues), 35.2 bits, see alignment E=1.3e-12 PF12974: Phosphonate-bd" amino acids 103 to 273 (171 residues), 28.5 bits, see alignment E=1.2e-10

Best Hits

KEGG orthology group: None (inferred from 48% identity to cci:CC1G_07052)

Predicted SEED Role

"FIG00930805: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>mRNA_2875 HMMPfam-NMT1/THI5 like-PF09084,SUPERFAMILY--SSF53850 (Rhodosporidium toruloides IFO0880)
MFVDERWRQVAGKEGVGDEDAWLRQADARHETYRHYAFCGKRTERSVSKVQRADLPFLLR
TQMSTQQKLRIAFVPEHFASPLLQLAAKDESIELVPCPSGTGQIMSAIKANEVDVAIALT
ESLIAGIAKKTADFKLVGTYVTSPLNWAVIVGKDSKHQSLGDLRGEKIGISRIGSGSQVM
ASYMALREGWTDKDGNVEPIQFEVLDTFKNLRDGVNDGRAAAFMWEHFTTKPYLNEVRFI
GNVPTPWHSWVVVATPSTTAPSSPLRSILESFLSNLTTSIRSFDAADARASSSKEFIKGH
FGYPEEDVKAWLEQVSYPKGEVCEVDRAMVEKTLTTLEAAGVLKAPAEGWNLEDFVDTSV
AKLQ