Protein Info for mRNA_2902 in Rhodosporidium toruloides IFO0880

Name: 11270
Annotation: K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 375 to 400 (26 residues), see Phobius details PF13850: ERGIC_N" amino acids 8 to 96 (89 residues), 89.9 bits, see alignment E=1.1e-29 PF07970: COPIIcoated_ERV" amino acids 143 to 397 (255 residues), 289.6 bits, see alignment E=1.9e-90

Best Hits

KEGG orthology group: None (inferred from 53% identity to scm:SCHCODRAFT_75438)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>mRNA_2902 K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3 (Rhodosporidium toruloides IFO0880)
MGRRFTVRGVDAFGKTMEDVKIKTGFGGALTLISLSLILVLTLYEYVDYRRVHMDPSIVV
DRSRGEKLVVNMNISFPRVPCYLLSVDIMDISGEHQNDIHHDLFKTRIAPTGTFVEEAIK
GKELTGDAERVARQKAEGYCGTCYGGTPPTDGPNPGCCNTCDEVRESYVRRGWSFVNPDS
VEQCVSEGWTQKIKDQADEGCNIAGKVRVNKVIGNFHLSPGRSFQTNQQHIHDLVPYLQG
GKKHDFGHEIHSFSFGSESEDEFVGMGGKKAADVKKALGIVNPLDGIKAHTEESNYMFQY
FLKVVSTKFQFLDGRELNTHQYSVTQYERDLTNNKANEKQGGHQTMHGYAGVPGLFFNYE
ISPLQVIHREDRQSFAHFITSTLAIIGGILTVAGLVDSFVYSGSRRLKEGGSGPKAGLGF
ASAQGKML