Protein Info for mRNA_2903 in Rhodosporidium toruloides IFO0880

Name: 11271
Annotation: K06662 HRAD17, RAD24 cell cycle checkpoint protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 797 PF03215: Rad17" amino acids 142 to 334 (193 residues), 90.6 bits, see alignment E=1.3e-29 PF00004: AAA" amino acids 196 to 229 (34 residues), 24 bits, see alignment (E = 4.5e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (797 amino acids)

>mRNA_2903 K06662 HRAD17, RAD24 cell cycle checkpoint protein (Rhodosporidium toruloides IFO0880)
MLTASGGSQDSQKPLKQFSISSFLPSQLTSATASSSKPSKPPTQRKPAKQKGENGADDVL
SEEEFKQPALPKKKRKAVEESKRVTKKSVVLDLTADDEEIDVGTSSSPASSPRISKKGKA
YAASGKGKGKAVEIEEEMDEEGGTDLWVDKYAPRDRDELSVHARKITDVEKWLTESFTLT
SSEPNPKLAKYRRVLVLSGPAGAGKTATVKALANEMGAEIVEWKEGTNVDYANDDARESL
VHRFSSFLARAGMAPALDFGSDPSDPSPSTSSATSSADIEDGSSSSRRLILLEDLPNVSH
YPTKLALRSAINQYLTSPRVTSPLVVIISEAMARPGDDDGGGAGWLNGNGRRGESLDARS
VLGVGILNHPACREISFNPIAPTIMRKALIRMLDRAYSSPNPPPAAARPPQATLDLLIAH
SSGDIRSAVMSLQFLTTEGSGDATSFGAGAKGGKAKKGAKKGKKRKRGDGSSDDDAASSM
SKGGKEKVKQLLQFVTARESSLFIFHALGKVLYNKRWGQSAEDDKKDLGRAGILQERQYD
KLPKHLRKQWTRDPSKVDPDVLFAEAPLDTDVFLSYLHHNYPPFTNETEECSGIMDALSE
SDALMTLQGEGEEAYRRLPLTSLYAFQVSVRSTLLNLPSPVPRCKQVLRKSELWETLKLR
RQNEEGLDEIGGKEGLWREEKRSVVAERVPWMGVIKPKDANPFLLDLATFPPLTEAAQPI
VTGGALGEREAALEEVDGEVLVDTSAPQMRTSGGASGRNGRSRVLEEVDEEDAEDTHEAT
QGEQEPLLYDPDDDIED